Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_077900.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02376-IBu 0 0.00 0.00 5.89 7.89
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04627-IBu 0 0.00 0.00 6.80 10.25
SmLINC06239-IBu 0 -0.42 0.14 2.33 5.24
Smp_077900.1 0 -0.17 -0.11 3.03 6.89

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_077900.1 SmLINC02376-IBu 0.81 2.00e-04 2.60e-03
Smp_077900.1 SmLINC04235-IBu 0.85 5.26e-05 8.00e-04
Smp_077900.1 SmLINC04627-IBu 0.85 5.67e-05 9.00e-04
Smp_077900.1 SmLINC06239-IBu 0.90 3.28e-06 1.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_000390.1 0 1.88 0.00 5.14 11.86
Smp_000410.1 0 0.05 -0.39 7.44 13.38
Smp_000420.1 0 0.46 -1.29 3.81 10.40
Smp_011270.1 0 0.01 6.30 4.96 15.38
Smp_033250.1 0 1.88 1.47 7.41 14.66
Smp_058160.1 0 6.89 3.04 6.00 10.33
Smp_077900.1 0 -0.17 -0.11 3.03 6.89
Smp_077920.1 0 4.92 0.00 5.39 11.83
Smp_130970.1 0 4.67 2.67 4.97 10.18
Smp_131110.2 0 0.00 2.23 5.86 12.58
Smp_144440.1 0 7.66 6.96 9.39 14.48
Smp_155310.1 0 0.00 0.00 6.53 13.34
Smp_155310.2 0 0.00 0.00 4.10 11.17
Smp_175560.1 0 1.88 2.67 7.60 12.31
Smp_191910.1 0 -4.11 -4.11 6.38 13.11

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_000390.1 Smp_077900.1 0.96 6.77e-09 1.76e-06
Smp_077900.1 Smp_000410.1 0.99 9.06e-14 1.54e-09
Smp_077900.1 Smp_000420.1 0.99 1.83e-13 2.34e-09
Smp_011270.1 Smp_077900.1 0.91 1.95e-06 8.57e-05
Smp_077900.1 Smp_033250.1 0.99 6.07e-14 1.21e-09
Smp_077900.1 Smp_058160.1 0.97 5.44e-10 3.45e-07
Smp_077920.1 Smp_077900.1 0.99 1.46e-15 1.20e-10
Smp_077900.1 Smp_130970.1 0.92 7.92e-07 4.53e-05
Smp_077900.1 Smp_131110.2 0.97 1.02e-09 5.16e-07
Smp_144440.1 Smp_077900.1 0.98 7.85e-12 2.37e-08
Smp_077900.1 Smp_155310.1 0.99 1.41e-14 4.88e-10
Smp_155310.2 Smp_077900.1 0.97 1.74e-10 1.66e-07
Smp_175560.1 Smp_077900.1 0.99 1.27e-15 1.10e-10
Smp_077900.1 Smp_191910.1 0.99 1.45e-15 1.19e-10