Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_077890.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC01520-IBu 0 0.00 0.00 7.35 9.60
SmLINC02029-IBu 0 0.00 0.00 6.82 9.29
SmLINC02376-IBu 0 0.00 0.00 5.89 7.89
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02577-IBu 0 0.00 1.73 7.37 9.60
SmLINC02783-IBu 0 0.00 3.67 6.24 9.23
SmLINC02786-IBu 0 0.00 1.47 4.70 9.60
SmLINC03326-IBu 0 1.89 -2.65 4.69 6.66
SmLINC03658-IBu 0 3.74 4.41 6.00 8.36
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04237-IBu 0 0.00 0.00 3.71 7.42
SmLINC04627-IBu 0 0.00 0.00 6.80 10.25
SmLINC05404-IBu 0 -1.83 -1.83 1.64 4.45
SmLINC05684-IBu 0 0.98 2.20 5.42 8.30
SmLINC06239-IBu 0 -0.42 0.14 2.33 5.24
Smp_077890.1 0 -1.12 -4.35 -0.67 5.48

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_077890.1 SmLINC00001-IBu 0.84 8.31e-05 1.20e-03
Smp_077890.1 SmLINC00004-IBu 0.80 2.00e-04 2.80e-03
Smp_077890.1 SmLINC01520-IBu 0.86 3.57e-05 6.00e-04
Smp_077890.1 SmLINC02029-IBu 0.88 1.41e-05 3.00e-04
Smp_077890.1 SmLINC02376-IBu 0.87 2.44e-05 5.00e-04
Smp_077890.1 SmLINC02539-IBu 0.83 1.00e-04 1.60e-03
Smp_077890.1 SmLINC02577-IBu 0.87 1.97e-05 4.00e-04
Smp_077890.1 SmLINC02783-IBu 0.92 1.04e-06 5.30e-05
Smp_077890.1 SmLINC02786-IBu 0.89 5.60e-06 1.00e-04
Smp_077890.1 SmLINC03326-IBu 0.84 6.84e-05 1.00e-03
Smp_077890.1 SmLINC03658-IBu 0.85 5.88e-05 9.00e-04
Smp_077890.1 SmLINC04235-IBu 0.94 1.04e-07 1.05e-05
Smp_077890.1 SmLINC04237-IBu 0.86 2.71e-05 5.00e-04
Smp_077890.1 SmLINC04627-IBu 0.95 4.55e-08 5.98e-06
Smp_077890.1 SmLINC05404-IBu 0.89 7.84e-06 2.00e-04
Smp_077890.1 SmLINC05684-IBu 0.93 5.11e-07 3.19e-05
Smp_077890.1 SmLINC06239-IBu 0.96 1.45e-08 2.74e-06
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_000390.1 0 1.88 0.00 5.14 11.86
Smp_004420.3 0 0.00 5.84 10.64 14.52
Smp_016490.2 0 1.32 2.33 8.95 11.08
Smp_028870.1 0 1.64 3.08 9.06 11.09
Smp_041540.1 0 3.75 -1.68 7.22 11.17
Smp_077890.1 0 -1.12 -4.35 -0.67 5.48
Smp_077920.1 0 4.92 0.00 5.39 11.83
Smp_085180.1 0 1.48 5.09 10.70 12.92
Smp_102780.1 0 3.53 4.72 9.81 11.88
Smp_105450.1 0 4.55 9.19 10.26 14.94
Smp_105450.2 0 0.07 -1.43 6.91 10.46
Smp_130100.1 0 -1.34 3.61 11.71 14.01
Smp_130970.1 0 4.67 2.67 4.97 10.18
Smp_136730.1 0 1.59 3.88 8.90 11.96
Smp_137460.1 0 4.80 0.00 4.12 10.48
Smp_137700.1 0 2.72 4.76 8.79 13.14
Smp_137720.1 0 0.96 3.51 9.34 11.95
Smp_138360.1 0 -0.10 -4.27 4.84 10.60
Smp_139160.1 0 1.79 5.17 7.78 10.90
Smp_139240.1 0 1.42 4.34 10.58 13.09
Smp_144440.1 0 7.66 6.96 9.39 14.48
Smp_152150.1 0 0.00 0.00 8.69 15.96
Smp_159650.1 0 4.04 4.18 8.26 10.40
Smp_162320.1 0 0.58 2.27 8.70 11.23
Smp_164400.1 0 1.88 2.19 6.73 12.73
Smp_175560.1 0 1.88 2.67 7.60 12.31
Smp_181070.1 0 0.13 0.63 8.07 11.05
Smp_187140.1 0 1.31 4.33 10.17 12.62
Smp_191910.1 0 -4.11 -4.11 6.38 13.11
Smp_194910.1 0 0.37 1.92 8.43 11.13
Smp_203030.1 0 2.55 0.41 8.36 10.39
Smp_205580.1 0 2.85 4.80 9.78 12.43

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_000390.1 Smp_077890.1 0.98 1.40e-11 3.40e-08
Smp_077890.1 Smp_004420.3 0.98 1.08e-10 1.22e-07
Smp_077890.1 Smp_016490.2 0.91 1.91e-06 8.44e-05
Smp_077890.1 Smp_028870.1 0.90 4.20e-06 1.00e-04
Smp_077890.1 Smp_041540.1 0.90 2.68e-06 1.00e-04
Smp_077890.1 Smp_077920.1 0.91 1.83e-06 8.17e-05
Smp_077890.1 Smp_085180.1 0.90 2.82e-06 1.00e-04
Smp_077890.1 Smp_102780.1 0.90 3.84e-06 1.00e-04
Smp_077890.1 Smp_105450.1 0.93 4.82e-07 3.20e-05
Smp_077890.1 Smp_105450.2 0.95 5.25e-08 6.98e-06
Smp_077890.1 Smp_130100.1 0.92 6.44e-07 3.92e-05
Smp_077890.1 Smp_130970.1 0.97 2.95e-10 2.33e-07
Smp_077890.1 Smp_136730.1 0.91 1.22e-06 6.16e-05
Smp_077890.1 Smp_137460.1 0.97 1.28e-09 5.98e-07
Smp_077890.1 Smp_137700.1 0.98 1.87e-11 4.06e-08
Smp_077890.1 Smp_137720.1 0.92 8.00e-07 4.56e-05
Smp_077890.1 Smp_138360.1 0.99 1.45e-14 4.96e-10
Smp_077890.1 Smp_139160.1 0.95 3.62e-08 5.43e-06
Smp_077890.1 Smp_139240.1 0.90 3.33e-06 1.00e-04
Smp_077890.1 Smp_144440.1 0.96 6.72e-09 1.75e-06
Smp_152150.1 Smp_077890.1 0.93 3.73e-07 2.68e-05
Smp_077890.1 Smp_159650.1 0.92 5.73e-07 3.61e-05
Smp_077890.1 Smp_162320.1 0.93 3.59e-07 2.61e-05
Smp_077890.1 Smp_164400.1 0.94 7.10e-08 8.57e-06
Smp_175560.1 Smp_077890.1 0.93 3.52e-07 2.57e-05
Smp_181070.1 Smp_077890.1 0.95 4.47e-08 6.26e-06
Smp_077890.1 Smp_187140.1 0.91 2.27e-06 9.53e-05
Smp_077890.1 Smp_191910.1 0.91 2.20e-06 9.32e-05
Smp_077890.1 Smp_194910.1 0.93 3.43e-07 2.53e-05
Smp_077890.1 Smp_203030.1 0.90 4.51e-06 1.00e-04
Smp_077890.1 Smp_205580.1 0.92 1.05e-06 5.53e-05