Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_077880.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC01979-IBu 0 1.86 0.63 -5.36 -5.36
SmLINC02646-IBu 0 0.70 0.79 -6.84 -2.55
SmLINC03485-IBu 0 -0.93 -1.24 -9.54 -9.54
SmLINC06646-IBu 0 1.59 1.70 -7.49 -7.49
Smp_077880.1 0 -0.58 -1.01 -13.13 -13.13

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_077880.1 SmLINC01979-IBu 0.83 1.00e-04 1.40e-03
Smp_077880.1 SmLINC02646-IBu 0.81 2.00e-04 2.50e-03
Smp_077880.1 SmLINC03485-IBu 0.92 9.46e-07 4.93e-05
Smp_077880.1 SmLINC06646-IBu 0.80 3.00e-04 3.40e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC03226-IBu 0 -0.03 -0.23 -5.79 -4.81
SmLINC03485-IBu 0 -0.93 -1.24 -9.54 -9.54
Smp_077880.1 0 -0.58 -1.01 -13.13 -13.13
Smp_194150.1 0 0.10 -0.41 -9.52 -9.52

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_077880.1 SmLINC03226-IBu 0.96 1.12e-08 2.47e-06
Smp_077880.1 SmLINC03485-IBu 0.92 9.46e-07 5.13e-05
Smp_077880.1 Smp_194150.1 0.92 1.10e-06 5.72e-05