Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_077860.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC01429-IBu 0 1.94 -0.56 -4.06 -6.10
SmLINC01979-IBu 0 1.86 0.63 -5.36 -5.36
SmLINC03111-IBu 0 3.25 1.95 -5.91 -5.91
SmLINC03395-IBu 0 1.75 0.29 -4.35 -2.74
SmLINC03443-IBu 0 2.85 1.67 -0.40 -9.21
SmLINC03486-IBu 0 0.84 -0.08 -7.36 -7.36
SmLINC04074-IBu 0 7.29 6.66 0.00 0.00
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06489-IBu 0 0.79 0.67 -4.22 -4.27
SmLINC06646-IBu 0 1.59 1.70 -7.49 -7.49
Smp_077860.1 0 1.35 0.90 -2.31 -3.33

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_077860.1 SmLINC01429-IBu 0.80 3.00e-04 3.20e-03
Smp_077860.1 SmLINC01979-IBu 0.83 1.00e-04 1.50e-03
Smp_077860.1 SmLINC03111-IBu 0.87 1.96e-05 4.00e-04
Smp_077860.1 SmLINC03395-IBu 0.94 8.15e-08 8.92e-06
Smp_077860.1 SmLINC03443-IBu 0.89 6.06e-06 1.00e-04
Smp_077860.1 SmLINC03486-IBu 0.84 6.32e-05 1.00e-03
Smp_077860.1 SmLINC04074-IBu 0.96 3.02e-09 9.68e-07
Smp_077860.1 SmLINC06024-IBu -0.82 1.00e-04 1.80e-03
Smp_077860.1 SmLINC06489-IBu 0.81 2.00e-04 2.60e-03
Smp_077860.1 SmLINC06646-IBu 0.87 2.40e-05 5.00e-04