Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_077820.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00372-IBu 0 1.42 3.02 -1.83 -2.95
SmLINC01316-IBu 0 -0.35 0.57 -11.60 -4.95
SmLINC02646-IBu 0 0.70 0.79 -6.84 -2.55
SmLINC04430-IBu 0 1.35 4.06 1.40 0.01
SmLINC06489-IBu 0 0.79 0.67 -4.22 -4.27
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
SmLINC06700-IBu 0 2.95 4.73 1.69 -0.46
SmLINC06836-IBu 0 5.91 8.23 0.00 0.00
Smp_077820.1 0 -0.65 -0.64 -4.87 -7.00

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_077820.1 SmLINC00372-IBu 0.84 6.92e-05 1.00e-03
Smp_077820.1 SmLINC01316-IBu 0.82 1.00e-04 1.90e-03
Smp_077820.1 SmLINC02646-IBu 0.82 1.00e-04 1.80e-03
Smp_077820.1 SmLINC04430-IBu 0.84 7.14e-05 1.10e-03
Smp_077820.1 SmLINC06489-IBu 0.80 2.00e-04 2.80e-03
Smp_077820.1 SmLINC06490-IBu 0.90 3.77e-06 1.00e-04
Smp_077820.1 SmLINC06700-IBu 0.86 3.44e-05 6.00e-04
Smp_077820.1 SmLINC06836-IBu 0.80 3.00e-04 3.40e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_077820.1 0 -0.65 -0.64 -4.87 -7.00
Smp_168800.1 0 0.13 -0.51 -10.46 -10.46
Smp_200120.1 0 0.50 0.80 -8.32 -11.63
Smp_205060.1 0 0.36 1.28 -6.63 -10.51

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_168800.1 Smp_077820.1 0.91 1.76e-06 7.97e-05
Smp_200120.1 Smp_077820.1 0.96 7.73e-09 1.92e-06
Smp_205060.1 Smp_077820.1 0.91 2.35e-06 9.77e-05