Schistosoma mansoni lncRNAs Database
This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, VinÃcius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.
Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.
Smp_077690.1 Data
Expression Fold Change Data [log2(FC)] - Download data
Pearson Correlation Coefficient Data - Download data
Expression Fold Change Data [log2(FC)] - Download data
| Gene ID | Cerc | 3S | 24S | Male | Female |
|---|---|---|---|---|---|
| SmLINC00282-IBu | 0 | 0.07 | -1.80 | -4.82 | -4.14 |
| SmLINC00784-IBu | 0 | 0.40 | -3.11 | -2.84 | -3.25 |
| SmLINC02255-IBu | 0 | -0.86 | -1.80 | -3.72 | -4.71 |
| SmLINC02630-IBu | 0 | -0.86 | -1.66 | -4.03 | -11.09 |
| SmLINC02657-IBu | 0 | -0.90 | -1.95 | -11.76 | -11.76 |
| SmLINC03848-IBu | 0 | -0.05 | -2.68 | -3.98 | -4.70 |
| SmLINC03930-IBu | 0 | -0.18 | -2.11 | -8.92 | -4.64 |
| SmLINC05284-IBu | 0 | -0.31 | -1.54 | -3.79 | -5.97 |
| SmLINC05716-IBu | 0 | 0.29 | -1.48 | -4.28 | -5.77 |
| SmLINC05720-IBu | 0 | 0.01 | -1.80 | -4.98 | -8.04 |
| SmLINC06128-IBu | 0 | -1.91 | -4.82 | -10.42 | -10.44 |
| SmLINC06535-IBu | 0 | -0.47 | -1.74 | -4.21 | -5.43 |
| Smp_077690.1 | 0 | -0.88 | -2.98 | -12.11 | -12.11 |
Pearson Correlation Coefficient Data - Download data
| Compared Gene | Gene | Pearson Correlation Value | p-value | B.-H. adjusted p-value |
|---|---|---|---|---|
| Smp_077690.1 | SmLINC00282-IBu | 0.82 | 1.00e-04 | 1.70e-03 |
| Smp_077690.1 | SmLINC00784-IBu | 0.80 | 2.00e-04 | 2.70e-03 |
| Smp_077690.1 | SmLINC02255-IBu | 0.89 | 8.65e-06 | 2.00e-04 |
| Smp_077690.1 | SmLINC02630-IBu | 0.88 | 1.15e-05 | 2.00e-04 |
| Smp_077690.1 | SmLINC02657-IBu | 0.86 | 3.18e-05 | 6.00e-04 |
| Smp_077690.1 | SmLINC03848-IBu | 0.82 | 1.00e-04 | 1.70e-03 |
| Smp_077690.1 | SmLINC03930-IBu | 0.87 | 2.04e-05 | 4.00e-04 |
| Smp_077690.1 | SmLINC05284-IBu | 0.82 | 1.00e-04 | 1.80e-03 |
| Smp_077690.1 | SmLINC05716-IBu | 0.81 | 2.00e-04 | 2.60e-03 |
| Smp_077690.1 | SmLINC05720-IBu | 0.84 | 7.42e-05 | 1.10e-03 |
| Smp_077690.1 | SmLINC06128-IBu | 0.83 | 9.27e-05 | 1.30e-03 |
| Smp_077690.1 | SmLINC06535-IBu | 0.85 | 4.94e-05 | 8.00e-04 |
Expression Fold Change Data [log2(FC)] - Download data
| Gene ID | Cerc | 3S | 24S | Male | Female |
|---|---|---|---|---|---|
| SmLINC00367-IBu | 0 | -0.32 | -2.33 | -6.04 | -11.31 |
| SmLINC00565-IBu | 0 | -1.33 | -5.82 | -10.51 | -4.87 |
| SmLINC01341-IBu | 0 | -0.38 | -2.69 | -3.98 | -4.09 |
| SmLINC02317-IBu | 0 | -0.23 | -5.11 | -7.32 | -7.30 |
| SmLINC02455-IBu | 0 | -0.81 | -2.44 | -4.53 | -4.60 |
| SmLINC04598-IBu | 0 | -0.68 | -2.61 | -7.38 | -7.35 |
| SmLINC04606-IBu | 0 | -0.48 | -2.83 | -5.66 | -8.00 |
| SmLINC06111-IBu | 0 | -0.47 | -2.79 | -12.47 | -8.65 |
| SmLINC06212-IBu | 0 | -0.75 | -3.47 | -10.55 | -10.55 |
| SmLINC06257-IBu | 0 | -0.36 | -2.04 | -6.75 | -8.37 |
| SmLINC06367-IBu | 0 | -0.17 | -2.22 | -3.46 | -5.10 |
| Smp_022730.1 | 0 | -0.73 | -1.37 | -5.39 | -4.86 |
| Smp_032920.1 | 0 | -0.45 | -4.95 | -3.51 | -6.20 |
| Smp_032970.1 | 0 | -0.24 | -2.98 | -11.57 | -7.79 |
| Smp_051670.1 | 0 | -0.76 | -2.49 | -6.26 | -8.85 |
| Smp_056680.2 | 0 | 0.01 | -3.20 | -6.32 | -3.44 |
| Smp_056680.3 | 0 | 0.01 | -3.20 | -6.32 | -3.44 |
| Smp_067980.1 | 0 | -0.94 | -11.67 | -4.00 | -4.18 |
| Smp_077690.1 | 0 | -0.88 | -2.98 | -12.11 | -12.11 |
| Smp_083340.4 | 0 | -0.76 | -5.02 | -9.88 | -12.95 |
| Smp_095460.1 | 0 | -0.21 | -2.74 | -7.08 | -8.45 |
| Smp_100600.1 | 0 | -0.51 | -2.27 | -6.43 | -6.43 |
| Smp_110400.3 | 0 | -1.47 | -2.30 | -8.95 | -9.88 |
| Smp_119050.1 | 0 | -1.30 | -4.96 | -4.14 | -6.99 |
| Smp_122020.1 | 0 | -0.55 | -2.82 | -5.25 | -6.91 |
| Smp_124150.1 | 0 | -1.14 | -4.97 | -8.99 | -7.14 |
| Smp_128900.1 | 0 | -0.43 | -1.87 | -6.58 | -7.65 |
| Smp_140680.2 | 0 | -1.06 | -11.75 | -8.40 | -8.18 |
| Smp_150450.1 | 0 | -0.77 | -4.60 | -4.36 | -4.30 |
| Smp_159130.1 | 0 | 0.25 | -4.61 | -5.63 | -8.00 |
| Smp_159900.1 | 0 | -1.03 | -2.21 | -4.34 | -4.82 |
| Smp_160230.1 | 0 | -0.76 | -3.24 | -8.69 | -10.72 |
| Smp_165510.1 | 0 | 0.09 | -3.88 | -8.04 | -8.63 |
| Smp_167350.1 | 0 | -0.80 | -1.92 | -3.39 | -6.34 |
| Smp_168080.2 | 0 | -1.01 | -12.06 | -12.06 | -12.06 |
| Smp_178390.1 | 0 | 0.45 | -1.39 | -7.29 | -7.87 |
| Smp_178960.1 | 0 | -0.22 | -5.20 | -9.36 | -7.07 |
| Smp_179300.3 | 0 | -0.68 | -3.23 | -9.39 | -8.12 |
| Smp_182770.1 | 0 | -1.46 | -4.03 | -8.25 | -8.62 |
| Smp_184760.1 | 0 | -0.25 | -4.83 | -11.75 | -14.03 |
| Smp_185350.1 | 0 | -1.75 | -2.87 | -10.48 | -10.48 |
| Smp_185370.1 | 0 | -0.81 | -2.32 | -9.88 | -9.93 |
| Smp_188900.1 | 0 | -1.35 | -4.02 | -11.76 | -11.76 |
| Smp_195150.1 | 0 | -0.70 | -1.90 | -6.54 | -7.80 |
| Smp_199470.1 | 0 | -0.59 | -3.42 | -6.26 | -6.59 |
| Smp_199850.1 | 0 | -0.54 | -1.71 | -4.55 | -4.12 |
| Smp_201750.1 | 0 | -0.56 | -4.79 | -7.34 | -11.47 |
| Smp_201900.1 | 0 | -0.73 | -2.99 | -4.99 | -3.71 |
| Smp_202140.1 | 0 | -1.27 | -3.64 | -10.44 | -10.44 |
| Smp_206090.1 | 0 | -0.17 | -0.84 | -12.35 | -12.13 |
| Smp_206150.1 | 0 | -1.95 | -4.12 | -11.47 | -11.47 |
Pearson Correlation Coefficient Data - Download data
| Compared Gene | Gene | Pearson Correlation Value | p-value | B.-H. adjusted p-value |
|---|---|---|---|---|
| Smp_077690.1 | SmLINC00367-IBu | 0.93 | 4.13e-07 | 2.87e-05 |
| Smp_077690.1 | SmLINC00565-IBu | 0.90 | 3.57e-06 | 1.00e-04 |
| Smp_077690.1 | SmLINC01341-IBu | 0.92 | 6.90e-07 | 4.11e-05 |
| Smp_077690.1 | SmLINC02317-IBu | 0.93 | 3.93e-07 | 2.78e-05 |
| Smp_077690.1 | SmLINC02455-IBu | 0.91 | 1.56e-06 | 7.33e-05 |
| Smp_077690.1 | SmLINC04598-IBu | 0.90 | 2.89e-06 | 1.00e-04 |
| Smp_077690.1 | SmLINC04606-IBu | 0.95 | 4.87e-08 | 6.63e-06 |
| Smp_077690.1 | SmLINC06111-IBu | 0.90 | 2.57e-06 | 1.00e-04 |
| Smp_077690.1 | SmLINC06212-IBu | 0.91 | 1.31e-06 | 6.47e-05 |
| Smp_077690.1 | SmLINC06257-IBu | 0.92 | 8.83e-07 | 4.89e-05 |
| Smp_077690.1 | SmLINC06367-IBu | 0.91 | 1.92e-06 | 8.48e-05 |
| Smp_077690.1 | Smp_022730.1 | 0.90 | 4.47e-06 | 1.00e-04 |
| Smp_077690.1 | Smp_032920.1 | 0.92 | 7.65e-07 | 4.42e-05 |
| Smp_077690.1 | Smp_032970.1 | 0.90 | 3.84e-06 | 1.00e-04 |
| Smp_051670.1 | Smp_077690.1 | 0.94 | 1.72e-07 | 1.57e-05 |
| Smp_056680.2 | Smp_077690.1 | 0.93 | 3.55e-07 | 2.59e-05 |
| Smp_077690.1 | Smp_056680.3 | 0.93 | 3.55e-07 | 2.59e-05 |
| Smp_077690.1 | Smp_067980.1 | 0.90 | 4.02e-06 | 1.00e-04 |
| Smp_077690.1 | Smp_083340.4 | 0.95 | 2.01e-08 | 3.64e-06 |
| Smp_077690.1 | Smp_095460.1 | 0.90 | 4.00e-06 | 1.00e-04 |
| Smp_077690.1 | Smp_100600.1 | 0.91 | 1.37e-06 | 6.68e-05 |
| Smp_077690.1 | Smp_110400.3 | 0.93 | 3.61e-07 | 2.62e-05 |
| Smp_077690.1 | Smp_119050.1 | 0.92 | 6.47e-07 | 3.93e-05 |
| Smp_077690.1 | Smp_122020.1 | 0.90 | 4.50e-06 | 1.00e-04 |
| Smp_077690.1 | Smp_124150.1 | 0.93 | 3.92e-07 | 2.77e-05 |
| Smp_077690.1 | Smp_128900.1 | 0.91 | 1.22e-06 | 6.16e-05 |
| Smp_077690.1 | Smp_140680.2 | 0.93 | 5.06e-07 | 3.31e-05 |
| Smp_077690.1 | Smp_150450.1 | 0.93 | 4.35e-07 | 2.98e-05 |
| Smp_077690.1 | Smp_159130.1 | 0.94 | 1.84e-07 | 1.64e-05 |
| Smp_077690.1 | Smp_159900.1 | 0.91 | 1.54e-06 | 7.23e-05 |
| Smp_077690.1 | Smp_160230.1 | 0.91 | 2.18e-06 | 9.24e-05 |
| Smp_077690.1 | Smp_165510.1 | 0.90 | 4.10e-06 | 1.00e-04 |
| Smp_077690.1 | Smp_167350.1 | 0.95 | 1.60e-08 | 3.12e-06 |
| Smp_077690.1 | Smp_168080.2 | 0.91 | 1.83e-06 | 8.18e-05 |
| Smp_077690.1 | Smp_178390.1 | 0.90 | 3.66e-06 | 1.00e-04 |
| Smp_077690.1 | Smp_178960.1 | 0.92 | 6.43e-07 | 3.91e-05 |
| Smp_077690.1 | Smp_179300.3 | 0.90 | 3.58e-06 | 1.00e-04 |
| Smp_077690.1 | Smp_182770.1 | 0.91 | 1.47e-06 | 7.02e-05 |
| Smp_184760.1 | Smp_077690.1 | 0.91 | 2.29e-06 | 9.58e-05 |
| Smp_077690.1 | Smp_185350.1 | 0.90 | 3.40e-06 | 1.00e-04 |
| Smp_077690.1 | Smp_185370.1 | 0.94 | 1.24e-07 | 1.26e-05 |
| Smp_077690.1 | Smp_188900.1 | 0.92 | 1.08e-06 | 5.65e-05 |
| Smp_195150.1 | Smp_077690.1 | 0.92 | 9.76e-07 | 5.24e-05 |
| Smp_077690.1 | Smp_199470.1 | 0.90 | 4.20e-06 | 1.00e-04 |
| Smp_077690.1 | Smp_199850.1 | 0.92 | 8.33e-07 | 4.69e-05 |
| Smp_201750.1 | Smp_077690.1 | 0.93 | 2.17e-07 | 1.84e-05 |
| Smp_077690.1 | Smp_201900.1 | 0.93 | 3.99e-07 | 2.81e-05 |
| Smp_077690.1 | Smp_202140.1 | 0.96 | 4.08e-09 | 1.26e-06 |
| Smp_077690.1 | Smp_206090.1 | 0.90 | 3.26e-06 | 1.00e-04 |
| Smp_206150.1 | Smp_077690.1 | 0.91 | 1.99e-06 | 8.69e-05 |