Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_077690.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00282-IBu 0 0.07 -1.80 -4.82 -4.14
SmLINC00784-IBu 0 0.40 -3.11 -2.84 -3.25
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC03848-IBu 0 -0.05 -2.68 -3.98 -4.70
SmLINC03930-IBu 0 -0.18 -2.11 -8.92 -4.64
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05716-IBu 0 0.29 -1.48 -4.28 -5.77
SmLINC05720-IBu 0 0.01 -1.80 -4.98 -8.04
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
Smp_077690.1 0 -0.88 -2.98 -12.11 -12.11

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_077690.1 SmLINC00282-IBu 0.82 1.00e-04 1.70e-03
Smp_077690.1 SmLINC00784-IBu 0.80 2.00e-04 2.70e-03
Smp_077690.1 SmLINC02255-IBu 0.89 8.65e-06 2.00e-04
Smp_077690.1 SmLINC02630-IBu 0.88 1.15e-05 2.00e-04
Smp_077690.1 SmLINC02657-IBu 0.86 3.18e-05 6.00e-04
Smp_077690.1 SmLINC03848-IBu 0.82 1.00e-04 1.70e-03
Smp_077690.1 SmLINC03930-IBu 0.87 2.04e-05 4.00e-04
Smp_077690.1 SmLINC05284-IBu 0.82 1.00e-04 1.80e-03
Smp_077690.1 SmLINC05716-IBu 0.81 2.00e-04 2.60e-03
Smp_077690.1 SmLINC05720-IBu 0.84 7.42e-05 1.10e-03
Smp_077690.1 SmLINC06128-IBu 0.83 9.27e-05 1.30e-03
Smp_077690.1 SmLINC06535-IBu 0.85 4.94e-05 8.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00367-IBu 0 -0.32 -2.33 -6.04 -11.31
SmLINC00565-IBu 0 -1.33 -5.82 -10.51 -4.87
SmLINC01341-IBu 0 -0.38 -2.69 -3.98 -4.09
SmLINC02317-IBu 0 -0.23 -5.11 -7.32 -7.30
SmLINC02455-IBu 0 -0.81 -2.44 -4.53 -4.60
SmLINC04598-IBu 0 -0.68 -2.61 -7.38 -7.35
SmLINC04606-IBu 0 -0.48 -2.83 -5.66 -8.00
SmLINC06111-IBu 0 -0.47 -2.79 -12.47 -8.65
SmLINC06212-IBu 0 -0.75 -3.47 -10.55 -10.55
SmLINC06257-IBu 0 -0.36 -2.04 -6.75 -8.37
SmLINC06367-IBu 0 -0.17 -2.22 -3.46 -5.10
Smp_022730.1 0 -0.73 -1.37 -5.39 -4.86
Smp_032920.1 0 -0.45 -4.95 -3.51 -6.20
Smp_032970.1 0 -0.24 -2.98 -11.57 -7.79
Smp_051670.1 0 -0.76 -2.49 -6.26 -8.85
Smp_056680.2 0 0.01 -3.20 -6.32 -3.44
Smp_056680.3 0 0.01 -3.20 -6.32 -3.44
Smp_067980.1 0 -0.94 -11.67 -4.00 -4.18
Smp_077690.1 0 -0.88 -2.98 -12.11 -12.11
Smp_083340.4 0 -0.76 -5.02 -9.88 -12.95
Smp_095460.1 0 -0.21 -2.74 -7.08 -8.45
Smp_100600.1 0 -0.51 -2.27 -6.43 -6.43
Smp_110400.3 0 -1.47 -2.30 -8.95 -9.88
Smp_119050.1 0 -1.30 -4.96 -4.14 -6.99
Smp_122020.1 0 -0.55 -2.82 -5.25 -6.91
Smp_124150.1 0 -1.14 -4.97 -8.99 -7.14
Smp_128900.1 0 -0.43 -1.87 -6.58 -7.65
Smp_140680.2 0 -1.06 -11.75 -8.40 -8.18
Smp_150450.1 0 -0.77 -4.60 -4.36 -4.30
Smp_159130.1 0 0.25 -4.61 -5.63 -8.00
Smp_159900.1 0 -1.03 -2.21 -4.34 -4.82
Smp_160230.1 0 -0.76 -3.24 -8.69 -10.72
Smp_165510.1 0 0.09 -3.88 -8.04 -8.63
Smp_167350.1 0 -0.80 -1.92 -3.39 -6.34
Smp_168080.2 0 -1.01 -12.06 -12.06 -12.06
Smp_178390.1 0 0.45 -1.39 -7.29 -7.87
Smp_178960.1 0 -0.22 -5.20 -9.36 -7.07
Smp_179300.3 0 -0.68 -3.23 -9.39 -8.12
Smp_182770.1 0 -1.46 -4.03 -8.25 -8.62
Smp_184760.1 0 -0.25 -4.83 -11.75 -14.03
Smp_185350.1 0 -1.75 -2.87 -10.48 -10.48
Smp_185370.1 0 -0.81 -2.32 -9.88 -9.93
Smp_188900.1 0 -1.35 -4.02 -11.76 -11.76
Smp_195150.1 0 -0.70 -1.90 -6.54 -7.80
Smp_199470.1 0 -0.59 -3.42 -6.26 -6.59
Smp_199850.1 0 -0.54 -1.71 -4.55 -4.12
Smp_201750.1 0 -0.56 -4.79 -7.34 -11.47
Smp_201900.1 0 -0.73 -2.99 -4.99 -3.71
Smp_202140.1 0 -1.27 -3.64 -10.44 -10.44
Smp_206090.1 0 -0.17 -0.84 -12.35 -12.13
Smp_206150.1 0 -1.95 -4.12 -11.47 -11.47

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_077690.1 SmLINC00367-IBu 0.93 4.13e-07 2.87e-05
Smp_077690.1 SmLINC00565-IBu 0.90 3.57e-06 1.00e-04
Smp_077690.1 SmLINC01341-IBu 0.92 6.90e-07 4.11e-05
Smp_077690.1 SmLINC02317-IBu 0.93 3.93e-07 2.78e-05
Smp_077690.1 SmLINC02455-IBu 0.91 1.56e-06 7.33e-05
Smp_077690.1 SmLINC04598-IBu 0.90 2.89e-06 1.00e-04
Smp_077690.1 SmLINC04606-IBu 0.95 4.87e-08 6.63e-06
Smp_077690.1 SmLINC06111-IBu 0.90 2.57e-06 1.00e-04
Smp_077690.1 SmLINC06212-IBu 0.91 1.31e-06 6.47e-05
Smp_077690.1 SmLINC06257-IBu 0.92 8.83e-07 4.89e-05
Smp_077690.1 SmLINC06367-IBu 0.91 1.92e-06 8.48e-05
Smp_077690.1 Smp_022730.1 0.90 4.47e-06 1.00e-04
Smp_077690.1 Smp_032920.1 0.92 7.65e-07 4.42e-05
Smp_077690.1 Smp_032970.1 0.90 3.84e-06 1.00e-04
Smp_051670.1 Smp_077690.1 0.94 1.72e-07 1.57e-05
Smp_056680.2 Smp_077690.1 0.93 3.55e-07 2.59e-05
Smp_077690.1 Smp_056680.3 0.93 3.55e-07 2.59e-05
Smp_077690.1 Smp_067980.1 0.90 4.02e-06 1.00e-04
Smp_077690.1 Smp_083340.4 0.95 2.01e-08 3.64e-06
Smp_077690.1 Smp_095460.1 0.90 4.00e-06 1.00e-04
Smp_077690.1 Smp_100600.1 0.91 1.37e-06 6.68e-05
Smp_077690.1 Smp_110400.3 0.93 3.61e-07 2.62e-05
Smp_077690.1 Smp_119050.1 0.92 6.47e-07 3.93e-05
Smp_077690.1 Smp_122020.1 0.90 4.50e-06 1.00e-04
Smp_077690.1 Smp_124150.1 0.93 3.92e-07 2.77e-05
Smp_077690.1 Smp_128900.1 0.91 1.22e-06 6.16e-05
Smp_077690.1 Smp_140680.2 0.93 5.06e-07 3.31e-05
Smp_077690.1 Smp_150450.1 0.93 4.35e-07 2.98e-05
Smp_077690.1 Smp_159130.1 0.94 1.84e-07 1.64e-05
Smp_077690.1 Smp_159900.1 0.91 1.54e-06 7.23e-05
Smp_077690.1 Smp_160230.1 0.91 2.18e-06 9.24e-05
Smp_077690.1 Smp_165510.1 0.90 4.10e-06 1.00e-04
Smp_077690.1 Smp_167350.1 0.95 1.60e-08 3.12e-06
Smp_077690.1 Smp_168080.2 0.91 1.83e-06 8.18e-05
Smp_077690.1 Smp_178390.1 0.90 3.66e-06 1.00e-04
Smp_077690.1 Smp_178960.1 0.92 6.43e-07 3.91e-05
Smp_077690.1 Smp_179300.3 0.90 3.58e-06 1.00e-04
Smp_077690.1 Smp_182770.1 0.91 1.47e-06 7.02e-05
Smp_184760.1 Smp_077690.1 0.91 2.29e-06 9.58e-05
Smp_077690.1 Smp_185350.1 0.90 3.40e-06 1.00e-04
Smp_077690.1 Smp_185370.1 0.94 1.24e-07 1.26e-05
Smp_077690.1 Smp_188900.1 0.92 1.08e-06 5.65e-05
Smp_195150.1 Smp_077690.1 0.92 9.76e-07 5.24e-05
Smp_077690.1 Smp_199470.1 0.90 4.20e-06 1.00e-04
Smp_077690.1 Smp_199850.1 0.92 8.33e-07 4.69e-05
Smp_201750.1 Smp_077690.1 0.93 2.17e-07 1.84e-05
Smp_077690.1 Smp_201900.1 0.93 3.99e-07 2.81e-05
Smp_077690.1 Smp_202140.1 0.96 4.08e-09 1.26e-06
Smp_077690.1 Smp_206090.1 0.90 3.26e-06 1.00e-04
Smp_206150.1 Smp_077690.1 0.91 1.99e-06 8.69e-05