Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_076890.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05720-IBu 0 0.01 -1.80 -4.98 -8.04
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
Smp_076890.1 0 -0.50 -0.05 -4.73 -3.71

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_076890.1 SmLINC01084-IBu -0.80 3.00e-04 3.40e-03
Smp_076890.1 SmLINC02255-IBu 0.83 1.00e-04 1.50e-03
Smp_076890.1 SmLINC02630-IBu 0.88 1.02e-05 2.00e-04
Smp_076890.1 SmLINC05284-IBu 0.80 2.00e-04 2.80e-03
Smp_076890.1 SmLINC05720-IBu 0.87 2.18e-05 4.00e-04
Smp_076890.1 SmLINC06535-IBu 0.81 2.00e-04 2.30e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_076890.1 0 -0.50 -0.05 -4.73 -3.71
Smp_097800.1 0 -1.17 -2.80 -12.04 -16.29
Smp_160230.1 0 -0.76 -3.24 -8.69 -10.72

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_097800.1 Smp_076890.1 0.91 1.57e-06 7.36e-05
Smp_160230.1 Smp_076890.1 0.91 1.70e-06 7.77e-05