Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_076650.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02026-IBu 0 -0.31 0.73 -7.72 -1.09
SmLINC04430-IBu 0 1.35 4.06 1.40 0.01
SmLINC05559-IBu 0 -0.72 2.59 -1.58 -1.98
SmLINC06700-IBu 0 2.95 4.73 1.69 -0.46
Smp_076650.1 0 0.65 2.86 -0.34 -4.53

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_076650.1 SmLINC02026-IBu 0.87 1.60e-05 3.00e-04
Smp_076650.1 SmLINC04430-IBu 0.94 7.11e-08 8.12e-06
Smp_076650.1 SmLINC05559-IBu 0.82 1.00e-04 1.80e-03
Smp_076650.1 SmLINC06700-IBu 0.80 2.00e-04 2.90e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_010140.2 0 7.72 10.83 -3.68 -3.68
Smp_042090.3 0 0.00 11.29 0.00 0.00
Smp_076650.1 0 0.65 2.86 -0.34 -4.53
Smp_085110.3 0 8.59 12.67 0.00 0.00
Smp_098890.1 0 -0.06 -0.10 -10.16 -9.46
Smp_138080.1 0 4.97 10.75 -3.79 3.75

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_010140.2 Smp_076650.1 0.94 9.16e-08 1.01e-05
Smp_042090.3 Smp_076650.1 0.98 1.91e-11 4.11e-08
Smp_085110.3 Smp_076650.1 0.93 2.39e-07 1.97e-05
Smp_098890.1 Smp_076650.1 0.91 1.45e-06 6.94e-05
Smp_138080.1 Smp_076650.1 0.91 1.33e-06 6.53e-05