Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_076540.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00007-IBu 0 2.71 2.19 5.12 7.33
SmLINC00266-IBu 0 2.25 3.99 6.14 6.95
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00376-IBu 0 1.87 -0.39 3.34 3.93
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01432-IBu 0 0.44 1.90 4.35 4.98
SmLINC01520-IBu 0 0.00 0.00 7.35 9.60
SmLINC02029-IBu 0 0.00 0.00 6.82 9.29
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02376-IBu 0 0.00 0.00 5.89 7.89
SmLINC02394-IBu 0 0.00 0.00 9.18 10.51
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02540-IBu 0 0.00 0.00 8.87 10.81
SmLINC02545-IBu 0 3.54 1.98 7.53 8.45
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC02577-IBu 0 0.00 1.73 7.37 9.60
SmLINC02776-IBu 0 4.33 2.79 6.19 9.25
SmLINC02783-IBu 0 0.00 3.67 6.24 9.23
SmLINC02786-IBu 0 0.00 1.47 4.70 9.60
SmLINC03108-IBu 0 1.12 -0.64 3.64 3.93
SmLINC03326-IBu 0 1.89 -2.65 4.69 6.66
SmLINC03658-IBu 0 3.74 4.41 6.00 8.36
SmLINC03927-IBu 0 0.00 3.30 7.68 8.27
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04237-IBu 0 0.00 0.00 3.71 7.42
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC04896-IBu 0 -1.86 -3.75 1.58 4.07
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05404-IBu 0 -1.83 -1.83 1.64 4.45
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC05684-IBu 0 0.98 2.20 5.42 8.30
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06415-IBu 0 0.00 5.09 7.86 8.72
Smp_076540.1 0 0.16 -0.07 2.99 4.31

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_076540.1 SmLINC00001-IBu 0.92 9.21e-07 4.84e-05
Smp_076540.1 SmLINC00004-IBu 0.94 8.85e-08 9.43e-06
Smp_076540.1 SmLINC00007-IBu 0.91 1.33e-06 6.29e-05
Smp_076540.1 SmLINC00266-IBu 0.89 8.45e-06 2.00e-04
Smp_076540.1 SmLINC00369-IBu 0.81 1.00e-04 2.20e-03
Smp_076540.1 SmLINC00376-IBu 0.84 8.51e-05 1.20e-03
Smp_076540.1 SmLINC00525-IBu 0.91 1.91e-06 8.15e-05
Smp_076540.1 SmLINC01084-IBu 0.90 3.36e-06 1.00e-04
Smp_076540.1 SmLINC01431-IBu 0.87 1.64e-05 3.00e-04
Smp_076540.1 SmLINC01432-IBu 0.81 2.00e-04 2.70e-03
Smp_076540.1 SmLINC01520-IBu 0.94 8.13e-08 8.90e-06
Smp_076540.1 SmLINC02029-IBu 0.92 1.02e-06 5.22e-05
Smp_076540.1 SmLINC02084-IBu 0.90 4.83e-06 1.00e-04
Smp_076540.1 SmLINC02255-IBu -0.80 3.00e-04 3.30e-03
Smp_076540.1 SmLINC02376-IBu 0.82 1.00e-04 1.80e-03
Smp_076540.1 SmLINC02394-IBu 0.87 1.80e-05 4.00e-04
Smp_076540.1 SmLINC02539-IBu 0.96 7.54e-09 1.77e-06
Smp_076540.1 SmLINC02540-IBu 0.92 8.61e-07 4.61e-05
Smp_076540.1 SmLINC02545-IBu 0.93 2.96e-07 2.18e-05
Smp_076540.1 SmLINC02546-IBu 0.84 6.11e-05 9.00e-04
Smp_076540.1 SmLINC02577-IBu 0.94 1.59e-07 1.41e-05
Smp_076540.1 SmLINC02776-IBu 0.84 8.64e-05 1.20e-03
Smp_076540.1 SmLINC02783-IBu 0.87 1.76e-05 4.00e-04
Smp_076540.1 SmLINC02786-IBu 0.85 4.54e-05 7.00e-04
Smp_076540.1 SmLINC03108-IBu 0.82 1.00e-04 1.70e-03
Smp_076540.1 SmLINC03326-IBu 0.87 1.61e-05 3.00e-04
Smp_076540.1 SmLINC03658-IBu 0.84 7.35e-05 1.10e-03
Smp_076540.1 SmLINC03927-IBu 0.93 2.72e-07 2.05e-05
Smp_076540.1 SmLINC04235-IBu 0.87 1.60e-05 3.00e-04
Smp_076540.1 SmLINC04237-IBu 0.81 2.00e-04 2.30e-03
Smp_076540.1 SmLINC04421-IBu 0.94 1.03e-07 1.05e-05
Smp_076540.1 SmLINC04423-IBu 0.85 5.02e-05 8.00e-04
Smp_076540.1 SmLINC04896-IBu 0.86 3.70e-05 6.00e-04
Smp_076540.1 SmLINC05289-IBu 0.91 1.54e-06 6.99e-05
Smp_076540.1 SmLINC05404-IBu 0.88 9.42e-06 2.00e-04
Smp_076540.1 SmLINC05604-IBu 0.96 5.30e-09 1.40e-06
Smp_076540.1 SmLINC05684-IBu 0.90 3.81e-06 1.00e-04
Smp_076540.1 SmLINC06024-IBu 0.88 1.00e-05 2.00e-04
Smp_076540.1 SmLINC06415-IBu 0.81 2.00e-04 2.40e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_007950.1 0 5.54 7.26 12.66 14.89
Smp_016490.2 0 1.32 2.33 8.95 11.08
Smp_028870.1 0 1.64 3.08 9.06 11.09
Smp_033260.1 0 0.00 0.00 11.56 12.33
Smp_037720.1 0 2.04 2.35 9.15 11.20
Smp_050350.3 0 7.35 7.57 12.17 13.18
Smp_056460.1 0 0.00 0.00 11.24 12.03
Smp_076540.1 0 0.16 -0.07 2.99 4.31
Smp_083430.1 0 4.18 6.49 11.73 13.40
Smp_095410.1 0 0.00 0.00 10.39 11.31
Smp_102780.1 0 3.53 4.72 9.81 11.88
Smp_123880.1 0 1.71 4.05 9.88 12.08
Smp_130100.1 0 -1.34 3.61 11.71 14.01
Smp_131410.1 0 3.39 4.65 11.85 14.02
Smp_137810.1 0 6.00 3.74 9.29 10.87
Smp_139240.1 0 1.42 4.34 10.58 13.09
Smp_140720.1 0 4.90 5.49 10.97 12.76
Smp_155570.1 0 -0.46 1.69 9.73 11.27
Smp_163700.1 0 -1.15 0.72 8.02 10.29
Smp_164320.1 0 0.97 4.76 9.93 12.08
Smp_187140.1 0 1.31 4.33 10.17 12.62
Smp_192780.1 0 1.26 4.06 9.03 10.25
Smp_194380.1 0 2.98 2.11 7.89 10.14
Smp_194910.1 0 0.37 1.92 8.43 11.13
Smp_196830.1 0 -0.76 0.59 8.97 10.89
Smp_202610.1 0 0.45 2.30 9.93 11.71
Smp_203030.1 0 2.55 0.41 8.36 10.39

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_076540.1 Smp_007950.1 0.93 4.34e-07 2.98e-05
Smp_076540.1 Smp_016490.2 0.91 1.72e-06 7.82e-05
Smp_076540.1 Smp_028870.1 0.90 2.85e-06 1.00e-04
Smp_033260.1 Smp_076540.1 0.90 2.56e-06 1.00e-04
Smp_076540.1 Smp_037720.1 0.96 4.11e-09 1.27e-06
Smp_050350.3 Smp_076540.1 0.92 7.94e-07 4.53e-05
Smp_076540.1 Smp_056460.1 0.94 1.53e-07 1.45e-05
Smp_083430.1 Smp_076540.1 0.94 9.10e-08 1.01e-05
Smp_076540.1 Smp_095410.1 0.93 2.24e-07 1.88e-05
Smp_076540.1 Smp_102780.1 0.92 1.08e-06 5.65e-05
Smp_076540.1 Smp_123880.1 0.92 9.00e-07 4.95e-05
Smp_076540.1 Smp_130100.1 0.91 2.12e-06 9.08e-05
Smp_076540.1 Smp_131410.1 0.92 5.67e-07 3.58e-05
Smp_076540.1 Smp_137810.1 0.96 2.72e-09 9.72e-07
Smp_076540.1 Smp_139240.1 0.91 2.03e-06 8.80e-05
Smp_076540.1 Smp_140720.1 0.96 2.57e-09 9.36e-07
Smp_076540.1 Smp_155570.1 0.94 7.09e-08 8.55e-06
Smp_076540.1 Smp_163700.1 0.91 1.45e-06 6.95e-05
Smp_076540.1 Smp_164320.1 0.91 1.86e-06 8.28e-05
Smp_076540.1 Smp_187140.1 0.91 1.50e-06 7.12e-05
Smp_076540.1 Smp_192780.1 0.95 1.95e-08 3.57e-06
Smp_194380.1 Smp_076540.1 0.92 9.14e-07 5.01e-05
Smp_076540.1 Smp_194910.1 0.90 4.37e-06 1.00e-04
Smp_076540.1 Smp_196830.1 0.96 3.23e-09 1.08e-06
Smp_076540.1 Smp_202610.1 0.93 3.17e-07 2.40e-05
Smp_076540.1 Smp_203030.1 0.92 5.32e-07 3.43e-05