Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_076320.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02029-IBu 0 0.00 0.00 6.82 9.29
SmLINC02376-IBu 0 0.00 0.00 5.89 7.89
SmLINC02783-IBu 0 0.00 3.67 6.24 9.23
SmLINC02786-IBu 0 0.00 1.47 4.70 9.60
SmLINC03658-IBu 0 3.74 4.41 6.00 8.36
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04627-IBu 0 0.00 0.00 6.80 10.25
SmLINC05404-IBu 0 -1.83 -1.83 1.64 4.45
SmLINC05684-IBu 0 0.98 2.20 5.42 8.30
SmLINC06239-IBu 0 -0.42 0.14 2.33 5.24
Smp_076320.1 0 -0.05 1.14 4.78 9.81

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_076320.1 SmLINC02029-IBu 0.83 1.00e-04 1.50e-03
Smp_076320.1 SmLINC02376-IBu 0.86 2.81e-05 5.00e-04
Smp_076320.1 SmLINC02783-IBu 0.83 1.00e-04 1.50e-03
Smp_076320.1 SmLINC02786-IBu 0.82 1.00e-04 2.00e-03
Smp_076320.1 SmLINC03658-IBu 0.81 1.00e-04 2.20e-03
Smp_076320.1 SmLINC04235-IBu 0.93 2.66e-07 2.02e-05
Smp_076320.1 SmLINC04627-IBu 0.87 1.89e-05 4.00e-04
Smp_076320.1 SmLINC05404-IBu 0.87 2.21e-05 4.00e-04
Smp_076320.1 SmLINC05684-IBu 0.85 3.94e-05 7.00e-04
Smp_076320.1 SmLINC06239-IBu 0.98 1.02e-11 2.53e-08
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_000390.1 0 1.88 0.00 5.14 11.86
Smp_000410.1 0 0.05 -0.39 7.44 13.38
Smp_000420.1 0 0.46 -1.29 3.81 10.40
Smp_004420.3 0 0.00 5.84 10.64 14.52
Smp_033250.1 0 1.88 1.47 7.41 14.66
Smp_076320.1 0 -0.05 1.14 4.78 9.81
Smp_077920.1 0 4.92 0.00 5.39 11.83
Smp_130970.1 0 4.67 2.67 4.97 10.18
Smp_131110.2 0 0.00 2.23 5.86 12.58
Smp_137460.1 0 4.80 0.00 4.12 10.48
Smp_137700.1 0 2.72 4.76 8.79 13.14
Smp_138360.1 0 -0.10 -4.27 4.84 10.60
Smp_144440.1 0 7.66 6.96 9.39 14.48
Smp_152150.1 0 0.00 0.00 8.69 15.96
Smp_155310.1 0 0.00 0.00 6.53 13.34
Smp_164400.1 0 1.88 2.19 6.73 12.73
Smp_175560.1 0 1.88 2.67 7.60 12.31
Smp_191910.1 0 -4.11 -4.11 6.38 13.11

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_000390.1 Smp_076320.1 0.98 1.33e-11 3.29e-08
Smp_076320.1 Smp_000410.1 0.90 3.41e-06 1.00e-04
Smp_000420.1 Smp_076320.1 0.93 2.09e-07 1.79e-05
Smp_004420.3 Smp_076320.1 0.92 9.25e-07 5.05e-05
Smp_076320.1 Smp_033250.1 0.92 1.06e-06 5.57e-05
Smp_077920.1 Smp_076320.1 0.93 4.20e-07 2.91e-05
Smp_076320.1 Smp_130970.1 0.99 9.36e-17 1.65e-11
Smp_131110.2 Smp_076320.1 0.95 2.12e-08 3.78e-06
Smp_137460.1 Smp_076320.1 0.95 3.62e-08 5.43e-06
Smp_076320.1 Smp_137700.1 0.92 5.78e-07 3.63e-05
Smp_076320.1 Smp_138360.1 0.96 5.79e-09 1.59e-06
Smp_144440.1 Smp_076320.1 0.96 2.51e-09 9.23e-07
Smp_152150.1 Smp_076320.1 0.92 7.66e-07 4.42e-05
Smp_076320.1 Smp_155310.1 0.92 5.94e-07 3.70e-05
Smp_164400.1 Smp_076320.1 0.91 1.20e-06 6.08e-05
Smp_175560.1 Smp_076320.1 0.95 1.75e-08 3.33e-06
Smp_191910.1 Smp_076320.1 0.93 2.60e-07 2.09e-05