Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_076040.3 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00037-IBu 0 0.38 -1.52 -5.66 -6.88
SmLINC00133-IBu 0 0.41 -1.72 -5.79 -6.76
SmLINC00282-IBu 0 0.07 -1.80 -4.82 -4.14
SmLINC00554-IBu 0 -0.37 -11.45 -11.45 -2.78
SmLINC00556-IBu 0 -0.74 -2.79 -5.06 -5.28
SmLINC00893-IBu 0 1.08 -1.15 -3.04 -4.37
SmLINC01486-IBu 0 0.59 -1.26 -4.75 -5.22
SmLINC01637-IBu 0 0.25 -0.93 -6.06 -3.40
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC03848-IBu 0 -0.05 -2.68 -3.98 -4.70
SmLINC03849-IBu 0 -0.25 -0.95 -4.04 -4.58
SmLINC03930-IBu 0 -0.18 -2.11 -8.92 -4.64
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05716-IBu 0 0.29 -1.48 -4.28 -5.77
SmLINC05720-IBu 0 0.01 -1.80 -4.98 -8.04
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
Smp_076040.3 0 -0.55 -3.71 -3.72 -3.34

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_076040.3 SmLINC00037-IBu 0.85 4.56e-05 7.00e-04
Smp_076040.3 SmLINC00133-IBu 0.86 2.76e-05 5.00e-04
Smp_076040.3 SmLINC00282-IBu 0.88 1.50e-05 3.00e-04
Smp_076040.3 SmLINC00554-IBu 0.85 5.99e-05 9.00e-04
Smp_076040.3 SmLINC00556-IBu 0.87 2.09e-05 4.00e-04
Smp_076040.3 SmLINC00893-IBu 0.81 2.00e-04 2.50e-03
Smp_076040.3 SmLINC01486-IBu 0.85 5.49e-05 9.00e-04
Smp_076040.3 SmLINC01637-IBu 0.82 1.00e-04 1.90e-03
Smp_076040.3 SmLINC02255-IBu 0.84 8.04e-05 1.20e-03
Smp_076040.3 SmLINC02630-IBu 0.83 9.99e-05 1.40e-03
Smp_076040.3 SmLINC02657-IBu 0.80 2.00e-04 2.70e-03
Smp_076040.3 SmLINC03848-IBu 0.81 2.00e-04 2.40e-03
Smp_076040.3 SmLINC03849-IBu 0.81 2.00e-04 2.40e-03
Smp_076040.3 SmLINC03930-IBu 0.83 9.83e-05 1.30e-03
Smp_076040.3 SmLINC05284-IBu 0.84 6.08e-05 9.00e-04
Smp_076040.3 SmLINC05716-IBu 0.81 2.00e-04 2.70e-03
Smp_076040.3 SmLINC05720-IBu 0.87 2.22e-05 4.00e-04
Smp_076040.3 SmLINC06535-IBu 0.92 9.17e-07 4.82e-05
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_032970.1 0 -0.24 -2.98 -11.57 -7.79
Smp_036270.4 0 -0.36 -2.80 -8.87 -13.92
Smp_076040.3 0 -0.55 -3.71 -3.72 -3.34
Smp_125070.1 0 0.25 -4.98 -10.91 -10.91
Smp_168080.2 0 -1.01 -12.06 -12.06 -12.06
Smp_195070.1 0 -1.13 -9.73 -18.26 -16.31

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_076040.3 Smp_032970.1 0.91 1.39e-06 6.75e-05
Smp_076040.3 Smp_036270.4 0.90 2.59e-06 1.00e-04
Smp_125070.1 Smp_076040.3 0.92 6.67e-07 4.02e-05
Smp_076040.3 Smp_168080.2 0.90 4.34e-06 1.00e-04
Smp_076040.3 Smp_195070.1 0.91 2.51e-06 1.00e-04