Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_076040.2 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00372-IBu 0 1.42 3.02 -1.83 -2.95
SmLINC01316-IBu 0 -0.35 0.57 -11.60 -4.95
SmLINC04430-IBu 0 1.35 4.06 1.40 0.01
SmLINC04947-IBu 0 -5.01 1.51 -1.96 -5.01
SmLINC05559-IBu 0 -0.72 2.59 -1.58 -1.98
SmLINC06700-IBu 0 2.95 4.73 1.69 -0.46
SmLINC06836-IBu 0 5.91 8.23 0.00 0.00
Smp_076040.2 0 -0.64 1.55 -9.83 -9.83

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_076040.2 SmLINC00372-IBu 0.98 2.81e-11 4.79e-08
Smp_076040.2 SmLINC01316-IBu 0.89 7.89e-06 2.00e-04
Smp_076040.2 SmLINC04430-IBu 0.90 3.38e-06 1.00e-04
Smp_076040.2 SmLINC04947-IBu 0.90 3.08e-06 1.00e-04
Smp_076040.2 SmLINC05559-IBu 0.96 3.72e-09 1.10e-06
Smp_076040.2 SmLINC06700-IBu 0.90 4.75e-06 1.00e-04
Smp_076040.2 SmLINC06836-IBu 0.98 1.03e-11 2.53e-08
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_010140.2 0 7.72 10.83 -3.68 -3.68
Smp_032120.1 0 0.03 1.02 -10.65 -10.65
Smp_034840.1 0 12.23 13.88 0.00 0.00
Smp_036270.3 0 1.18 2.21 -10.17 -10.17
Smp_062070.1 0 9.47 10.97 6.18 8.79
Smp_063650.3 0 8.82 10.72 0.00 0.00
Smp_076040.2 0 -0.64 1.55 -9.83 -9.83
Smp_084940.2 0 10.34 11.98 9.66 9.92
Smp_103540.1 0 11.43 12.63 8.84 9.65
Smp_138080.1 0 4.97 10.75 -3.79 3.75
Smp_159070.3 0 -0.25 1.24 -10.95 -4.48
Smp_159150.1 0 12.28 13.98 12.38 11.81
Smp_200120.1 0 0.50 0.80 -8.32 -11.63

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_010140.2 Smp_076040.2 0.92 1.10e-06 5.72e-05
Smp_076040.2 Smp_032120.1 0.96 6.14e-09 1.65e-06
Smp_076040.2 Smp_034840.1 0.93 2.79e-07 2.19e-05
Smp_076040.2 Smp_036270.3 0.94 1.32e-07 1.31e-05
Smp_076040.2 Smp_062070.1 0.93 3.68e-07 2.65e-05
Smp_063650.3 Smp_076040.2 0.92 1.18e-06 6.01e-05
Smp_076040.2 Smp_084940.2 0.93 4.04e-07 2.83e-05
Smp_103540.1 Smp_076040.2 0.92 8.64e-07 4.81e-05
Smp_138080.1 Smp_076040.2 0.90 4.21e-06 1.00e-04
Smp_159070.3 Smp_076040.2 0.98 2.72e-11 5.16e-08
Smp_076040.2 Smp_159150.1 0.91 1.21e-06 6.11e-05
Smp_200120.1 Smp_076040.2 0.91 2.41e-06 9.93e-05