Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_075430.1 Data


Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC05685-IBu 0 5.64 5.26 5.37 7.19
Smp_075430.1 0 1.59 -3.18 0.03 2.14

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_075430.1 SmLINC05685-IBu 0.82 1.00e-04 1.60e-03
Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC01230-IBu 0 6.45 0.00 2.13 3.20
SmLINC04693-IBu 0 7.21 3.85 4.35 6.49
SmLINC05685-IBu 0 5.64 5.26 5.37 7.19
SmLINC06667-IBu 0 5.49 2.05 4.25 3.56
Smp_075430.1 0 1.59 -3.18 0.03 2.14

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_075430.1 SmLINC01230-IBu 0.82 1.00e-04 1.80e-03
Smp_075430.1 SmLINC04693-IBu 0.89 5.62e-06 1.00e-04
Smp_075430.1 SmLINC05685-IBu 0.82 1.00e-04 2.00e-03
Smp_075430.1 SmLINC06667-IBu 0.82 1.00e-04 2.00e-03