Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_075280.2 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00484-IBu 0 -0.02 2.64 6.82 5.24
SmLINC04475-IBu 0 -0.34 2.17 4.09 3.42
SmLINC04769-IBu 0 1.36 2.94 5.73 3.10
SmLINC05632-IBu 0 4.56 6.06 7.28 6.53
SmLINC05870-IBu 0 0.25 4.65 5.77 4.71
SmLINC06221-IBu 0 2.16 3.44 6.39 5.80
SmLINC06449-IBu 0 2.33 4.31 7.30 6.63
Smp_075280.2 0 0.78 3.30 4.94 4.11

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_075280.2 SmLINC00484-IBu 0.83 9.22e-05 1.30e-03
Smp_075280.2 SmLINC04475-IBu 0.81 1.00e-04 2.20e-03
Smp_075280.2 SmLINC04769-IBu 0.86 3.72e-05 6.00e-04
Smp_075280.2 SmLINC05632-IBu 0.90 3.11e-06 1.00e-04
Smp_075280.2 SmLINC05870-IBu 0.89 7.24e-06 2.00e-04
Smp_075280.2 SmLINC06221-IBu 0.82 1.00e-04 1.90e-03
Smp_075280.2 SmLINC06449-IBu 0.80 2.00e-04 2.80e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_040720.3 0 8.84 10.93 11.66 10.78
Smp_075280.2 0 0.78 3.30 4.94 4.11

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_040720.3 Smp_075280.2 0.9 3.23e-06 1.00e-04