Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_075220.3 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00372-IBu 0 1.42 3.02 -1.83 -2.95
SmLINC02026-IBu 0 -0.31 0.73 -7.72 -1.09
SmLINC04430-IBu 0 1.35 4.06 1.40 0.01
SmLINC05559-IBu 0 -0.72 2.59 -1.58 -1.98
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
SmLINC06836-IBu 0 5.91 8.23 0.00 0.00
Smp_075220.3 0 -0.21 1.05 -2.86 -3.43

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_075220.3 SmLINC00372-IBu 0.85 5.13e-05 8.00e-04
Smp_075220.3 SmLINC02026-IBu 0.95 2.12e-08 3.55e-06
Smp_075220.3 SmLINC04430-IBu 0.90 2.69e-06 1.00e-04
Smp_075220.3 SmLINC05559-IBu 0.87 2.16e-05 4.00e-04
Smp_075220.3 SmLINC06490-IBu 0.90 4.66e-06 1.00e-04
Smp_075220.3 SmLINC06836-IBu 0.82 1.00e-04 1.70e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_010140.2 0 7.72 10.83 -3.68 -3.68
Smp_075220.3 0 -0.21 1.05 -2.86 -3.43
Smp_098890.1 0 -0.06 -0.10 -10.16 -9.46
Smp_138080.1 0 4.97 10.75 -3.79 3.75
Smp_194060.1 0 0.19 1.68 -10.58 -10.66

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_075220.3 Smp_010140.2 0.93 2.72e-07 2.15e-05
Smp_098890.1 Smp_075220.3 0.96 2.52e-09 9.25e-07
Smp_075220.3 Smp_138080.1 0.91 1.60e-06 7.43e-05
Smp_075220.3 Smp_194060.1 0.98 1.78e-11 3.93e-08