Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_074560.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02039-IBu 0 -3.01 -8.41 -3.05 -3.36
SmLINC02678-IBu 0 -3.18 -2.40 -3.22 -5.56
SmLINC02888-IBu 0 -1.98 -4.28 -4.50 -5.76
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
Smp_074560.1 0 -3.36 -3.15 -2.58 -5.11

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_074560.1 SmLINC02039-IBu 0.86 3.74e-05 6.00e-04
Smp_074560.1 SmLINC02678-IBu 0.95 3.06e-08 4.56e-06
Smp_074560.1 SmLINC02888-IBu 0.83 1.00e-04 1.60e-03
Smp_074560.1 SmLINC06128-IBu 0.81 1.00e-04 2.20e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_074560.1 0 -3.36 -3.15 -2.58 -5.11
Smp_102670.1 0 -2.95 -8.79 -12.62 -12.62
Smp_133770.1 0 -4.18 -7.68 -11.38 -11.45
Smp_153240.1 0 -4.59 -8.67 -11.23 -11.04
Smp_169190.1 0 -3.08 -5.99 -19.20 -16.89
Smp_178240.1 0 -3.79 -9.33 -8.87 -11.00

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_102670.1 Smp_074560.1 0.91 1.61e-06 7.46e-05
Smp_074560.1 Smp_133770.1 0.93 2.82e-07 2.21e-05
Smp_074560.1 Smp_153240.1 0.94 1.84e-07 1.64e-05
Smp_074560.1 Smp_169190.1 0.91 1.38e-06 6.71e-05
Smp_178240.1 Smp_074560.1 0.91 1.43e-06 6.86e-05