Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_074200.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02038-IBu 0 -0.52 -1.85 -8.62 -8.62
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC03769-IBu 0 -1.05 -2.94 -6.89 -9.10
SmLINC04957-IBu 0 -2.62 -5.90 -3.92 -7.44
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06890-IBu 0 -2.18 -6.70 -7.95 -9.08
SmLINC06903-IBu 0 -1.36 -4.25 -5.91 -3.41
Smp_074200.1 0 -1.40 -4.07 -6.05 -6.98

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_074200.1 SmLINC02038-IBu 0.88 9.90e-06 2.00e-04
Smp_074200.1 SmLINC02657-IBu 0.83 9.16e-05 1.30e-03
Smp_074200.1 SmLINC03769-IBu 0.95 5.72e-08 6.99e-06
Smp_074200.1 SmLINC04957-IBu 0.86 3.65e-05 6.00e-04
Smp_074200.1 SmLINC06128-IBu 0.82 1.00e-04 1.70e-03
Smp_074200.1 SmLINC06890-IBu 0.80 2.00e-04 3.10e-03
Smp_074200.1 SmLINC06903-IBu 0.87 2.39e-05 5.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_034940.3 0 -1.53 -6.25 -9.66 -13.38
Smp_074200.1 0 -1.40 -4.07 -6.05 -6.98
Smp_109240.1 0 -1.29 -3.52 -6.30 -10.11

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_034940.3 Smp_074200.1 0.96 3.65e-09 1.17e-06
Smp_109240.1 Smp_074200.1 0.92 1.03e-06 5.48e-05