Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_071640.2 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01316-IBu 0 -0.35 0.57 -11.60 -4.95
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC02026-IBu 0 -0.31 0.73 -7.72 -1.09
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06145-IBu 0 1.04 -4.71 4.38 4.76
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
Smp_071640.2 0 -0.94 -0.54 -4.50 -4.39

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_071640.2 SmLINC00004-IBu -0.83 1.00e-04 1.40e-03
Smp_071640.2 SmLINC00369-IBu -0.82 1.00e-04 2.00e-03
Smp_071640.2 SmLINC00525-IBu -0.85 4.95e-05 8.00e-04
Smp_071640.2 SmLINC00633-IBu -0.81 1.00e-04 2.20e-03
Smp_071640.2 SmLINC01084-IBu -0.83 9.18e-05 1.30e-03
Smp_071640.2 SmLINC01316-IBu 0.87 2.26e-05 4.00e-04
Smp_071640.2 SmLINC01431-IBu -0.85 4.46e-05 7.00e-04
Smp_071640.2 SmLINC02026-IBu 0.82 1.00e-04 1.80e-03
Smp_071640.2 SmLINC02084-IBu -0.82 1.00e-04 1.80e-03
Smp_071640.2 SmLINC02546-IBu -0.80 2.00e-04 3.00e-03
Smp_071640.2 SmLINC04421-IBu -0.85 4.77e-05 8.00e-04
Smp_071640.2 SmLINC04478-IBu -0.81 1.00e-04 2.30e-03
Smp_071640.2 SmLINC05289-IBu -0.80 2.00e-04 2.90e-03
Smp_071640.2 SmLINC05604-IBu -0.82 1.00e-04 2.00e-03
Smp_071640.2 SmLINC06024-IBu -0.82 1.00e-04 1.70e-03
Smp_071640.2 SmLINC06145-IBu -0.82 1.00e-04 1.70e-03
Smp_071640.2 SmLINC06490-IBu 0.92 9.81e-07 5.06e-05
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_071640.2 0 -0.94 -0.54 -4.50 -4.39
Smp_160410.1 0 -2.26 -1.17 -10.25 -6.19

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_071640.2 Smp_160410.1 0.91 1.99e-06 8.67e-05