Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_071380.3 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC03236-IBu 0 5.69 1.95 7.32 7.27
SmLINC04481-IBu 0 4.43 2.49 6.85 2.74
SmLINC05632-IBu 0 4.56 6.06 7.28 6.53
SmLINC05990-IBu 0 9.67 10.42 11.79 11.49
Smp_071380.3 0 11.07 11.55 12.98 12.17

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_071380.3 SmLINC03236-IBu 0.81 2.00e-04 2.40e-03
Smp_071380.3 SmLINC04481-IBu 0.87 1.61e-05 3.00e-04
Smp_071380.3 SmLINC05632-IBu 0.87 1.53e-05 3.00e-04
Smp_071380.3 SmLINC05990-IBu 0.95 3.18e-08 4.68e-06
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC05990-IBu 0 9.67 10.42 11.79 11.49
Smp_045220.2 0 0.93 0.81 4.20 3.26
Smp_071380.3 0 11.07 11.55 12.98 12.17
Smp_204720.1 0 1.63 2.16 4.61 4.41
Smp_205920.1 0 2.95 2.42 4.90 4.77

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_071380.3 SmLINC05990-IBu 0.95 3.18e-08 4.97e-06
Smp_071380.3 Smp_045220.2 0.90 2.79e-06 1.00e-04
Smp_204720.1 Smp_071380.3 0.91 2.46e-06 1.00e-04
Smp_071380.3 Smp_205920.1 0.94 1.72e-07 1.57e-05