Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_071380.2 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02039-IBu 0 -3.01 -8.41 -3.05 -3.36
SmLINC02678-IBu 0 -3.18 -2.40 -3.22 -5.56
SmLINC04957-IBu 0 -2.62 -5.90 -3.92 -7.44
SmLINC05989-IBu 0 -1.59 -3.64 -6.05 -6.59
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06903-IBu 0 -1.36 -4.25 -5.91 -3.41
Smp_071380.2 0 -3.62 -7.62 -10.38 -10.26

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_071380.2 SmLINC02039-IBu 0.85 4.79e-05 8.00e-04
Smp_071380.2 SmLINC02678-IBu 0.83 1.00e-04 1.60e-03
Smp_071380.2 SmLINC04957-IBu 0.82 1.00e-04 2.00e-03
Smp_071380.2 SmLINC05989-IBu 0.86 3.62e-05 6.00e-04
Smp_071380.2 SmLINC06128-IBu 0.87 1.63e-05 3.00e-04
Smp_071380.2 SmLINC06903-IBu 0.83 1.00e-04 1.60e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00674-IBu 0 -2.62 -2.93 -7.07 -6.23
Smp_003770.1 0 -2.73 -3.76 -4.30 -3.65
Smp_006560.1 0 -3.55 -6.46 -6.31 -5.44
Smp_014400.5 0 -2.15 -4.06 -6.32 -9.42
Smp_018880.1 0 -2.71 -8.49 -10.03 -6.16
Smp_019750.2 0 -2.70 -5.17 -4.10 -4.19
Smp_021730.1 0 -2.52 -3.78 -4.00 -3.90
Smp_022430.1 0 -3.19 -4.81 -4.61 -4.50
Smp_028990.2 0 -2.03 -4.85 -4.73 -6.76
Smp_030500.1 0 -2.77 -6.42 -6.74 -6.44
Smp_033610.1 0 -2.04 -4.32 -5.07 -4.63
Smp_034550.1 0 -2.91 -5.29 -2.60 -4.93
Smp_036250.1 0 -3.24 -3.82 -4.15 -3.72
Smp_038100.1 0 -2.11 -3.55 -4.08 -3.42
Smp_038530.1 0 -2.20 -4.62 -4.98 -6.68
Smp_042160.1 0 -2.29 -5.11 -4.28 -4.75
Smp_052060.1 0 -2.31 -3.14 -4.09 -3.50
Smp_055770.1 0 -5.16 -5.96 -12.28 -12.28
Smp_057060.1 0 -3.71 -5.93 -6.06 -6.08
Smp_057790.1 0 -3.82 -7.29 -4.86 -7.43
Smp_061870.1 0 -2.53 -4.47 -5.29 -5.38
Smp_063090.1 0 -2.16 -4.16 -3.57 -3.93
Smp_071380.2 0 -3.62 -7.62 -10.38 -10.26
Smp_071390.1 0 -3.12 -4.67 -2.84 -3.82
Smp_079220.1 0 -2.48 -4.55 -6.52 -5.99
Smp_079920.1 0 -2.43 -3.90 -3.20 -3.57
Smp_079970.1 0 -3.36 -6.77 -9.16 -12.28
Smp_083720.1 0 -2.37 -5.50 -6.31 -5.77
Smp_092320.1 0 -1.82 -3.08 -5.42 -5.28
Smp_097490.1 0 -3.10 -5.15 -2.72 -1.99
Smp_099670.1 0 -3.51 -4.19 -5.26 -6.78
Smp_099680.1 0 -3.17 -4.14 -4.93 -7.18
Smp_102670.1 0 -2.95 -8.79 -12.62 -12.62
Smp_106390.1 0 -2.35 -4.90 -10.78 -6.23
Smp_114910.1 0 -3.08 -7.52 -7.91 -7.70
Smp_120920.3 0 -1.87 -3.40 -3.67 -4.06
Smp_125440.1 0 -4.16 -3.48 -3.28 -4.46
Smp_133770.1 0 -4.18 -7.68 -11.38 -11.45
Smp_134410.1 0 -2.22 -3.88 -6.81 -12.78
Smp_135250.1 0 -4.50 -7.60 -5.52 -7.87
Smp_152260.1 0 -3.17 -4.39 -4.03 -4.71
Smp_152780.1 0 -4.06 -8.92 -8.72 -11.55
Smp_153240.1 0 -4.59 -8.67 -11.23 -11.04
Smp_153600.1 0 -2.66 -5.24 -5.88 -4.89
Smp_154020.1 0 -1.89 -2.51 -3.88 -5.45
Smp_154300.1 0 -4.18 -5.59 -3.13 -4.15
Smp_154370.1 0 -2.82 -7.17 -3.52 -2.90
Smp_155890.1 0 -3.01 -4.45 -2.70 -3.71
Smp_157310.1 0 -3.02 -6.78 -4.07 -5.91
Smp_159190.1 0 -3.70 -3.60 -3.46 -3.88
Smp_163390.1 0 -8.96 -8.96 -8.96 -8.96
Smp_166950.1 0 -1.86 -2.33 -5.56 -4.94
Smp_169190.1 0 -3.08 -5.99 -19.20 -16.89
Smp_184750.1 0 -1.93 -3.13 -4.74 -4.46
Smp_194770.1 0 -2.35 -7.85 -7.77 -7.92
Smp_195160.1 0 -1.78 -3.62 -7.03 -7.47
Smp_204770.1 0 -2.64 -6.46 -5.44 -5.13
Smp_205970.1 0 -3.84 -6.54 -6.54 -6.54
Smp_214150.1 0 -3.99 -7.32 -3.18 -5.90

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_071380.2 SmLINC00674-IBu 0.93 2.92e-07 2.26e-05
Smp_003770.1 Smp_071380.2 0.93 2.84e-07 2.22e-05
Smp_006560.1 Smp_071380.2 0.93 2.22e-07 1.87e-05
Smp_014400.5 Smp_071380.2 0.96 4.90e-09 1.42e-06
Smp_018880.1 Smp_071380.2 0.96 9.12e-09 2.14e-06
Smp_019750.2 Smp_071380.2 0.96 3.20e-09 1.08e-06
Smp_071380.2 Smp_021730.1 0.94 9.10e-08 1.01e-05
Smp_022430.1 Smp_071380.2 0.92 8.03e-07 4.57e-05
Smp_071380.2 Smp_028990.2 0.90 3.89e-06 1.00e-04
Smp_030500.1 Smp_071380.2 0.97 2.21e-09 8.48e-07
Smp_033610.1 Smp_071380.2 0.91 1.52e-06 7.18e-05
Smp_034550.1 Smp_071380.2 0.93 2.42e-07 1.98e-05
Smp_036250.1 Smp_071380.2 0.93 1.99e-07 1.73e-05
Smp_038100.1 Smp_071380.2 0.94 1.27e-07 1.27e-05
Smp_038530.1 Smp_071380.2 0.91 1.74e-06 7.90e-05
Smp_042160.1 Smp_071380.2 0.90 2.82e-06 1.00e-04
Smp_052060.1 Smp_071380.2 0.95 4.62e-08 6.40e-06
Smp_055770.1 Smp_071380.2 0.94 8.83e-08 9.94e-06
Smp_057060.1 Smp_071380.2 0.95 2.37e-08 4.08e-06
Smp_071380.2 Smp_057790.1 0.96 4.67e-09 1.38e-06
Smp_061870.1 Smp_071380.2 0.92 5.25e-07 3.40e-05
Smp_063090.1 Smp_071380.2 0.93 2.97e-07 2.29e-05
Smp_071390.1 Smp_071380.2 0.92 6.20e-07 3.81e-05
Smp_071380.2 Smp_079220.1 0.96 4.22e-09 1.29e-06
Smp_079920.1 Smp_071380.2 0.94 1.28e-07 1.28e-05
Smp_079970.1 Smp_071380.2 0.93 4.97e-07 3.27e-05
Smp_083720.1 Smp_071380.2 0.93 2.27e-07 1.90e-05
Smp_092320.1 Smp_071380.2 0.91 2.00e-06 8.69e-05
Smp_097490.1 Smp_071380.2 0.95 2.82e-08 4.58e-06
Smp_099670.1 Smp_071380.2 0.95 2.12e-08 3.77e-06
Smp_071380.2 Smp_099680.1 0.91 1.26e-06 6.28e-05
Smp_102670.1 Smp_071380.2 0.92 9.73e-07 5.23e-05
Smp_106390.1 Smp_071380.2 0.91 2.25e-06 9.47e-05
Smp_114910.1 Smp_071380.2 0.98 1.23e-10 1.32e-07
Smp_071380.2 Smp_120920.3 0.91 1.78e-06 8.01e-05
Smp_125440.1 Smp_071380.2 0.92 5.28e-07 3.41e-05
Smp_133770.1 Smp_071380.2 0.90 2.80e-06 1.00e-04
Smp_134410.1 Smp_071380.2 0.94 1.51e-07 1.44e-05
Smp_135250.1 Smp_071380.2 0.92 6.99e-07 4.14e-05
Smp_152260.1 Smp_071380.2 0.95 1.57e-08 3.09e-06
Smp_152780.1 Smp_071380.2 0.94 8.86e-08 9.96e-06
Smp_071380.2 Smp_153240.1 0.91 1.25e-06 6.25e-05
Smp_071380.2 Smp_153600.1 0.91 1.26e-06 6.30e-05
Smp_154020.1 Smp_071380.2 0.90 2.64e-06 1.00e-04
Smp_154300.1 Smp_071380.2 0.92 1.16e-06 5.92e-05
Smp_154370.1 Smp_071380.2 0.94 1.26e-07 1.27e-05
Smp_155890.1 Smp_071380.2 0.95 5.16e-08 6.90e-06
Smp_157310.1 Smp_071380.2 0.94 1.00e-07 1.08e-05
Smp_159190.1 Smp_071380.2 0.91 2.20e-06 9.32e-05
Smp_163390.1 Smp_071380.2 0.94 1.02e-07 1.10e-05
Smp_166950.1 Smp_071380.2 0.90 3.76e-06 1.00e-04
Smp_169190.1 Smp_071380.2 0.91 1.88e-06 8.34e-05
Smp_184750.1 Smp_071380.2 0.93 4.98e-07 3.27e-05
Smp_194770.1 Smp_071380.2 0.94 1.63e-07 1.51e-05
Smp_195160.1 Smp_071380.2 0.91 1.21e-06 6.11e-05
Smp_204770.1 Smp_071380.2 0.92 6.74e-07 4.04e-05
Smp_205970.1 Smp_071380.2 0.91 1.54e-06 7.23e-05
Smp_071380.2 Smp_214150.1 0.95 5.62e-08 7.31e-06