Schistosoma mansoni lncRNAs Database

This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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2. Smp_071380.2

Smp_071380.2 Data

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Correlation between Smp_071380.2 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Expression Fold Change Data [log₂(FC)] - Download data

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Pearson Correlation Coefficient Data - Download data

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Correlation between Smp_071380.2 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Expression Fold Change Data [log₂(FC)] - Download data

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Gene ID	Cerc	3S	24S	Male	Female
SmLINC02039-IBu	0	-3.01	-8.41	-3.05	-3.36
SmLINC02678-IBu	0	-3.18	-2.40	-3.22	-5.56
SmLINC04957-IBu	0	-2.62	-5.90	-3.92	-7.44
SmLINC05989-IBu	0	-1.59	-3.64	-6.05	-6.59
SmLINC06128-IBu	0	-1.91	-4.82	-10.42	-10.44
SmLINC06903-IBu	0	-1.36	-4.25	-5.91	-3.41
Smp_071380.2	0	-3.62	-7.62	-10.38	-10.26

Pearson Correlation Coefficient Data - Download data

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Compared Gene	Gene	Pearson Correlation Value	p-value	B.-H. adjusted p-value
Smp_071380.2	SmLINC02039-IBu	0.85	4.79e-05	8.00e-04
Smp_071380.2	SmLINC02678-IBu	0.83	1.00e-04	1.60e-03
Smp_071380.2	SmLINC04957-IBu	0.82	1.00e-04	2.00e-03
Smp_071380.2	SmLINC05989-IBu	0.86	3.62e-05	6.00e-04
Smp_071380.2	SmLINC06128-IBu	0.87	1.63e-05	3.00e-04
Smp_071380.2	SmLINC06903-IBu	0.83	1.00e-04	1.60e-03

Correlation between Smp_071380.2 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Expression Fold Change Data [log₂(FC)] - Download data

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Gene ID	Cerc	3S	24S	Male	Female
SmLINC00674-IBu	0	-2.62	-2.93	-7.07	-6.23
Smp_003770.1	0	-2.73	-3.76	-4.30	-3.65
Smp_006560.1	0	-3.55	-6.46	-6.31	-5.44
Smp_014400.5	0	-2.15	-4.06	-6.32	-9.42
Smp_018880.1	0	-2.71	-8.49	-10.03	-6.16
Smp_019750.2	0	-2.70	-5.17	-4.10	-4.19
Smp_021730.1	0	-2.52	-3.78	-4.00	-3.90
Smp_022430.1	0	-3.19	-4.81	-4.61	-4.50
Smp_028990.2	0	-2.03	-4.85	-4.73	-6.76
Smp_030500.1	0	-2.77	-6.42	-6.74	-6.44
Smp_033610.1	0	-2.04	-4.32	-5.07	-4.63
Smp_034550.1	0	-2.91	-5.29	-2.60	-4.93
Smp_036250.1	0	-3.24	-3.82	-4.15	-3.72
Smp_038100.1	0	-2.11	-3.55	-4.08	-3.42
Smp_038530.1	0	-2.20	-4.62	-4.98	-6.68
Smp_042160.1	0	-2.29	-5.11	-4.28	-4.75
Smp_052060.1	0	-2.31	-3.14	-4.09	-3.50
Smp_055770.1	0	-5.16	-5.96	-12.28	-12.28
Smp_057060.1	0	-3.71	-5.93	-6.06	-6.08
Smp_057790.1	0	-3.82	-7.29	-4.86	-7.43
Smp_061870.1	0	-2.53	-4.47	-5.29	-5.38
Smp_063090.1	0	-2.16	-4.16	-3.57	-3.93
Smp_071380.2	0	-3.62	-7.62	-10.38	-10.26
Smp_071390.1	0	-3.12	-4.67	-2.84	-3.82
Smp_079220.1	0	-2.48	-4.55	-6.52	-5.99
Smp_079920.1	0	-2.43	-3.90	-3.20	-3.57
Smp_079970.1	0	-3.36	-6.77	-9.16	-12.28
Smp_083720.1	0	-2.37	-5.50	-6.31	-5.77
Smp_092320.1	0	-1.82	-3.08	-5.42	-5.28
Smp_097490.1	0	-3.10	-5.15	-2.72	-1.99
Smp_099670.1	0	-3.51	-4.19	-5.26	-6.78
Smp_099680.1	0	-3.17	-4.14	-4.93	-7.18
Smp_102670.1	0	-2.95	-8.79	-12.62	-12.62
Smp_106390.1	0	-2.35	-4.90	-10.78	-6.23
Smp_114910.1	0	-3.08	-7.52	-7.91	-7.70
Smp_120920.3	0	-1.87	-3.40	-3.67	-4.06
Smp_125440.1	0	-4.16	-3.48	-3.28	-4.46
Smp_133770.1	0	-4.18	-7.68	-11.38	-11.45
Smp_134410.1	0	-2.22	-3.88	-6.81	-12.78
Smp_135250.1	0	-4.50	-7.60	-5.52	-7.87
Smp_152260.1	0	-3.17	-4.39	-4.03	-4.71
Smp_152780.1	0	-4.06	-8.92	-8.72	-11.55
Smp_153240.1	0	-4.59	-8.67	-11.23	-11.04
Smp_153600.1	0	-2.66	-5.24	-5.88	-4.89
Smp_154020.1	0	-1.89	-2.51	-3.88	-5.45
Smp_154300.1	0	-4.18	-5.59	-3.13	-4.15
Smp_154370.1	0	-2.82	-7.17	-3.52	-2.90
Smp_155890.1	0	-3.01	-4.45	-2.70	-3.71
Smp_157310.1	0	-3.02	-6.78	-4.07	-5.91
Smp_159190.1	0	-3.70	-3.60	-3.46	-3.88
Smp_163390.1	0	-8.96	-8.96	-8.96	-8.96
Smp_166950.1	0	-1.86	-2.33	-5.56	-4.94
Smp_169190.1	0	-3.08	-5.99	-19.20	-16.89
Smp_184750.1	0	-1.93	-3.13	-4.74	-4.46
Smp_194770.1	0	-2.35	-7.85	-7.77	-7.92
Smp_195160.1	0	-1.78	-3.62	-7.03	-7.47
Smp_204770.1	0	-2.64	-6.46	-5.44	-5.13
Smp_205970.1	0	-3.84	-6.54	-6.54	-6.54
Smp_214150.1	0	-3.99	-7.32	-3.18	-5.90

Pearson Correlation Coefficient Data - Download data

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Compared Gene	Gene	Pearson Correlation Value	p-value	B.-H. adjusted p-value
Smp_071380.2	SmLINC00674-IBu	0.93	2.92e-07	2.26e-05
Smp_003770.1	Smp_071380.2	0.93	2.84e-07	2.22e-05
Smp_006560.1	Smp_071380.2	0.93	2.22e-07	1.87e-05
Smp_014400.5	Smp_071380.2	0.96	4.90e-09	1.42e-06
Smp_018880.1	Smp_071380.2	0.96	9.12e-09	2.14e-06
Smp_019750.2	Smp_071380.2	0.96	3.20e-09	1.08e-06
Smp_071380.2	Smp_021730.1	0.94	9.10e-08	1.01e-05
Smp_022430.1	Smp_071380.2	0.92	8.03e-07	4.57e-05
Smp_071380.2	Smp_028990.2	0.90	3.89e-06	1.00e-04
Smp_030500.1	Smp_071380.2	0.97	2.21e-09	8.48e-07
Smp_033610.1	Smp_071380.2	0.91	1.52e-06	7.18e-05
Smp_034550.1	Smp_071380.2	0.93	2.42e-07	1.98e-05
Smp_036250.1	Smp_071380.2	0.93	1.99e-07	1.73e-05
Smp_038100.1	Smp_071380.2	0.94	1.27e-07	1.27e-05
Smp_038530.1	Smp_071380.2	0.91	1.74e-06	7.90e-05
Smp_042160.1	Smp_071380.2	0.90	2.82e-06	1.00e-04
Smp_052060.1	Smp_071380.2	0.95	4.62e-08	6.40e-06
Smp_055770.1	Smp_071380.2	0.94	8.83e-08	9.94e-06
Smp_057060.1	Smp_071380.2	0.95	2.37e-08	4.08e-06
Smp_071380.2	Smp_057790.1	0.96	4.67e-09	1.38e-06
Smp_061870.1	Smp_071380.2	0.92	5.25e-07	3.40e-05
Smp_063090.1	Smp_071380.2	0.93	2.97e-07	2.29e-05
Smp_071390.1	Smp_071380.2	0.92	6.20e-07	3.81e-05
Smp_071380.2	Smp_079220.1	0.96	4.22e-09	1.29e-06
Smp_079920.1	Smp_071380.2	0.94	1.28e-07	1.28e-05
Smp_079970.1	Smp_071380.2	0.93	4.97e-07	3.27e-05
Smp_083720.1	Smp_071380.2	0.93	2.27e-07	1.90e-05
Smp_092320.1	Smp_071380.2	0.91	2.00e-06	8.69e-05
Smp_097490.1	Smp_071380.2	0.95	2.82e-08	4.58e-06
Smp_099670.1	Smp_071380.2	0.95	2.12e-08	3.77e-06
Smp_071380.2	Smp_099680.1	0.91	1.26e-06	6.28e-05
Smp_102670.1	Smp_071380.2	0.92	9.73e-07	5.23e-05
Smp_106390.1	Smp_071380.2	0.91	2.25e-06	9.47e-05
Smp_114910.1	Smp_071380.2	0.98	1.23e-10	1.32e-07
Smp_071380.2	Smp_120920.3	0.91	1.78e-06	8.01e-05
Smp_125440.1	Smp_071380.2	0.92	5.28e-07	3.41e-05
Smp_133770.1	Smp_071380.2	0.90	2.80e-06	1.00e-04
Smp_134410.1	Smp_071380.2	0.94	1.51e-07	1.44e-05
Smp_135250.1	Smp_071380.2	0.92	6.99e-07	4.14e-05
Smp_152260.1	Smp_071380.2	0.95	1.57e-08	3.09e-06
Smp_152780.1	Smp_071380.2	0.94	8.86e-08	9.96e-06
Smp_071380.2	Smp_153240.1	0.91	1.25e-06	6.25e-05
Smp_071380.2	Smp_153600.1	0.91	1.26e-06	6.30e-05
Smp_154020.1	Smp_071380.2	0.90	2.64e-06	1.00e-04
Smp_154300.1	Smp_071380.2	0.92	1.16e-06	5.92e-05
Smp_154370.1	Smp_071380.2	0.94	1.26e-07	1.27e-05
Smp_155890.1	Smp_071380.2	0.95	5.16e-08	6.90e-06
Smp_157310.1	Smp_071380.2	0.94	1.00e-07	1.08e-05
Smp_159190.1	Smp_071380.2	0.91	2.20e-06	9.32e-05
Smp_163390.1	Smp_071380.2	0.94	1.02e-07	1.10e-05
Smp_166950.1	Smp_071380.2	0.90	3.76e-06	1.00e-04
Smp_169190.1	Smp_071380.2	0.91	1.88e-06	8.34e-05
Smp_184750.1	Smp_071380.2	0.93	4.98e-07	3.27e-05
Smp_194770.1	Smp_071380.2	0.94	1.63e-07	1.51e-05
Smp_195160.1	Smp_071380.2	0.91	1.21e-06	6.11e-05
Smp_204770.1	Smp_071380.2	0.92	6.74e-07	4.04e-05
Smp_205970.1	Smp_071380.2	0.91	1.54e-06	7.23e-05
Smp_071380.2	Smp_214150.1	0.95	5.62e-08	7.31e-06