Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_070360.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC01520-IBu 0 0.00 0.00 7.35 9.60
SmLINC02029-IBu 0 0.00 0.00 6.82 9.29
SmLINC02376-IBu 0 0.00 0.00 5.89 7.89
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02577-IBu 0 0.00 1.73 7.37 9.60
SmLINC02783-IBu 0 0.00 3.67 6.24 9.23
SmLINC02786-IBu 0 0.00 1.47 4.70 9.60
SmLINC03326-IBu 0 1.89 -2.65 4.69 6.66
SmLINC03658-IBu 0 3.74 4.41 6.00 8.36
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04237-IBu 0 0.00 0.00 3.71 7.42
SmLINC04627-IBu 0 0.00 0.00 6.80 10.25
SmLINC04896-IBu 0 -1.86 -3.75 1.58 4.07
SmLINC05404-IBu 0 -1.83 -1.83 1.64 4.45
SmLINC05684-IBu 0 0.98 2.20 5.42 8.30
SmLINC06239-IBu 0 -0.42 0.14 2.33 5.24
Smp_070360.1 0 -5.70 -3.47 -0.68 2.98

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_070360.1 SmLINC00001-IBu 0.85 5.66e-05 9.00e-04
Smp_070360.1 SmLINC00004-IBu 0.84 8.72e-05 1.20e-03
Smp_070360.1 SmLINC01520-IBu 0.85 4.86e-05 8.00e-04
Smp_070360.1 SmLINC02029-IBu 0.89 7.90e-06 2.00e-04
Smp_070360.1 SmLINC02376-IBu 0.86 3.57e-05 6.00e-04
Smp_070360.1 SmLINC02539-IBu 0.83 9.29e-05 1.30e-03
Smp_070360.1 SmLINC02577-IBu 0.87 2.40e-05 5.00e-04
Smp_070360.1 SmLINC02783-IBu 0.90 3.96e-06 1.00e-04
Smp_070360.1 SmLINC02786-IBu 0.88 1.05e-05 2.00e-04
Smp_070360.1 SmLINC03326-IBu 0.83 1.00e-04 1.40e-03
Smp_070360.1 SmLINC03658-IBu 0.82 1.00e-04 2.00e-03
Smp_070360.1 SmLINC04235-IBu 0.95 3.87e-08 5.35e-06
Smp_070360.1 SmLINC04237-IBu 0.83 1.00e-04 1.60e-03
Smp_070360.1 SmLINC04627-IBu 0.93 4.75e-07 3.03e-05
Smp_070360.1 SmLINC04896-IBu 0.80 3.00e-04 3.20e-03
Smp_070360.1 SmLINC05404-IBu 0.89 4.98e-06 1.00e-04
Smp_070360.1 SmLINC05684-IBu 0.92 1.05e-06 5.34e-05
Smp_070360.1 SmLINC06239-IBu 0.96 8.98e-09 1.98e-06
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_000390.1 0 1.88 0.00 5.14 11.86
Smp_004420.3 0 0.00 5.84 10.64 14.52
Smp_016490.2 0 1.32 2.33 8.95 11.08
Smp_028870.1 0 1.64 3.08 9.06 11.09
Smp_041540.1 0 3.75 -1.68 7.22 11.17
Smp_070360.1 0 -5.70 -3.47 -0.68 2.98
Smp_085180.1 0 1.48 5.09 10.70 12.92
Smp_086450.3 0 0.00 0.00 9.98 12.32
Smp_102780.1 0 3.53 4.72 9.81 11.88
Smp_105450.1 0 4.55 9.19 10.26 14.94
Smp_105450.2 0 0.07 -1.43 6.91 10.46
Smp_130100.1 0 -1.34 3.61 11.71 14.01
Smp_130970.1 0 4.67 2.67 4.97 10.18
Smp_136730.1 0 1.59 3.88 8.90 11.96
Smp_137460.1 0 4.80 0.00 4.12 10.48
Smp_137700.1 0 2.72 4.76 8.79 13.14
Smp_137720.1 0 0.96 3.51 9.34 11.95
Smp_138360.1 0 -0.10 -4.27 4.84 10.60
Smp_139160.1 0 1.79 5.17 7.78 10.90
Smp_144440.1 0 7.66 6.96 9.39 14.48
Smp_152150.1 0 0.00 0.00 8.69 15.96
Smp_159650.1 0 4.04 4.18 8.26 10.40
Smp_162320.1 0 0.58 2.27 8.70 11.23
Smp_164400.1 0 1.88 2.19 6.73 12.73
Smp_175560.1 0 1.88 2.67 7.60 12.31
Smp_181070.1 0 0.13 0.63 8.07 11.05
Smp_187140.1 0 1.31 4.33 10.17 12.62
Smp_194910.1 0 0.37 1.92 8.43 11.13
Smp_203030.1 0 2.55 0.41 8.36 10.39
Smp_205580.1 0 2.85 4.80 9.78 12.43

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_000390.1 Smp_070360.1 0.97 1.05e-09 5.25e-07
Smp_004420.3 Smp_070360.1 0.96 6.84e-09 1.77e-06
Smp_016490.2 Smp_070360.1 0.91 1.93e-06 8.48e-05
Smp_070360.1 Smp_028870.1 0.90 4.18e-06 1.00e-04
Smp_041540.1 Smp_070360.1 0.90 4.63e-06 1.00e-04
Smp_085180.1 Smp_070360.1 0.90 4.65e-06 1.00e-04
Smp_086450.3 Smp_070360.1 0.91 2.13e-06 9.10e-05
Smp_102780.1 Smp_070360.1 0.90 3.93e-06 1.00e-04
Smp_105450.1 Smp_070360.1 0.91 2.16e-06 9.18e-05
Smp_105450.2 Smp_070360.1 0.93 2.07e-07 1.78e-05
Smp_130100.1 Smp_070360.1 0.92 5.76e-07 3.62e-05
Smp_130970.1 Smp_070360.1 0.96 2.85e-09 1.00e-06
Smp_136730.1 Smp_070360.1 0.90 3.47e-06 1.00e-04
Smp_137460.1 Smp_070360.1 0.95 1.63e-08 3.17e-06
Smp_137700.1 Smp_070360.1 0.96 3.36e-09 1.11e-06
Smp_137720.1 Smp_070360.1 0.91 1.84e-06 8.21e-05
Smp_138360.1 Smp_070360.1 0.98 8.95e-11 1.08e-07
Smp_139160.1 Smp_070360.1 0.93 3.01e-07 2.31e-05
Smp_144440.1 Smp_070360.1 0.95 5.60e-08 7.29e-06
Smp_152150.1 Smp_070360.1 0.92 6.31e-07 3.86e-05
Smp_159650.1 Smp_070360.1 0.92 7.39e-07 4.31e-05
Smp_162320.1 Smp_070360.1 0.92 8.80e-07 4.87e-05
Smp_164400.1 Smp_070360.1 0.93 1.96e-07 1.72e-05
Smp_175560.1 Smp_070360.1 0.92 7.69e-07 4.43e-05
Smp_181070.1 Smp_070360.1 0.94 1.16e-07 1.20e-05
Smp_187140.1 Smp_070360.1 0.90 3.91e-06 1.00e-04
Smp_070360.1 Smp_194910.1 0.92 7.62e-07 4.40e-05
Smp_203030.1 Smp_070360.1 0.90 2.88e-06 1.00e-04
Smp_205580.1 Smp_070360.1 0.91 2.13e-06 9.09e-05