Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_069160.2 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00372-IBu 0 1.42 3.02 -1.83 -2.95
SmLINC01316-IBu 0 -0.35 0.57 -11.60 -4.95
SmLINC02026-IBu 0 -0.31 0.73 -7.72 -1.09
SmLINC04430-IBu 0 1.35 4.06 1.40 0.01
SmLINC05559-IBu 0 -0.72 2.59 -1.58 -1.98
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
SmLINC06836-IBu 0 5.91 8.23 0.00 0.00
Smp_069160.2 0 -0.02 1.03 -5.33 -4.92

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_069160.2 SmLINC00372-IBu 0.90 3.03e-06 1.00e-04
Smp_069160.2 SmLINC01316-IBu 0.86 2.66e-05 5.00e-04
Smp_069160.2 SmLINC02026-IBu 0.88 1.15e-05 2.00e-04
Smp_069160.2 SmLINC04430-IBu 0.86 3.34e-05 6.00e-04
Smp_069160.2 SmLINC05559-IBu 0.86 2.94e-05 5.00e-04
Smp_069160.2 SmLINC06490-IBu 0.92 7.13e-07 4.04e-05
Smp_069160.2 SmLINC06836-IBu 0.86 3.80e-05 6.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_069160.2 0 -0.02 1.03 -5.33 -4.92
Smp_090930.5 0 0.88 1.41 -11.45 -5.15
Smp_098890.1 0 -0.06 -0.10 -10.16 -9.46
Smp_159070.3 0 -0.25 1.24 -10.95 -4.48
Smp_160410.1 0 -2.26 -1.17 -10.25 -6.19
Smp_194060.1 0 0.19 1.68 -10.58 -10.66
Smp_200120.1 0 0.50 0.80 -8.32 -11.63
Smp_205060.1 0 0.36 1.28 -6.63 -10.51

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_090930.5 Smp_069160.2 0.94 9.75e-08 1.06e-05
Smp_098890.1 Smp_069160.2 0.94 6.40e-08 7.98e-06
Smp_159070.3 Smp_069160.2 0.92 6.37e-07 3.89e-05
Smp_160410.1 Smp_069160.2 0.90 4.86e-06 1.00e-04
Smp_194060.1 Smp_069160.2 0.95 3.68e-08 5.49e-06
Smp_200120.1 Smp_069160.2 0.94 1.19e-07 1.22e-05
Smp_205060.1 Smp_069160.2 0.93 4.95e-07 3.26e-05