Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_068710.1 Data


Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC03927-IBu 0 0.00 3.30 7.68 8.27
SmLINC03930-IBu 0 -0.18 -2.11 -8.92 -4.64
Smp_068710.1 0 -0.37 1.37 3.96 4.03

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_068710.1 SmLINC03927-IBu 0.78 4.00e-04 3.70e-03
Smp_068710.1 SmLINC03930-IBu -0.72 2.30e-03 1.20e-02
Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00477-IBu 0 -1.14 -0.46 4.37 3.06
SmLINC00484-IBu 0 -0.02 2.64 6.82 5.24
SmLINC00548-IBu 0 1.58 1.11 7.48 7.20
SmLINC00556-IBu 0 -0.74 -2.79 -5.06 -5.28
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC00769-IBu 0 0.00 0.00 11.31 9.29
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01122-IBu 0 0.00 0.00 6.36 6.32
SmLINC01139-IBu 0 -1.59 -5.89 3.96 3.29
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01435-IBu 0 -2.57 1.02 6.17 5.55
SmLINC01538-IBu 0 0.00 3.62 10.85 10.43
SmLINC01569-IBu 0 -0.90 -0.28 4.61 4.49
SmLINC01733-IBu 0 0.89 2.09 5.78 5.68
SmLINC01746-IBu 0 -3.80 -0.66 2.43 2.13
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC03309-IBu 0 -0.28 0.72 5.03 4.47
SmLINC03542-IBu 0 3.10 -2.22 9.17 7.75
SmLINC03693-IBu 0 0.04 0.11 4.65 4.21
SmLINC03849-IBu 0 -0.25 -0.95 -4.04 -4.58
SmLINC04054-IBu 0 0.17 -0.60 5.38 2.72
SmLINC04345-IBu 0 -0.21 -0.00 6.97 4.53
SmLINC04432-IBu 0 0.66 2.72 5.35 5.03
SmLINC04475-IBu 0 -0.34 2.17 4.09 3.42
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC04637-IBu 0 5.61 0.00 9.87 8.40
SmLINC04663-IBu 0 -2.56 -3.27 2.68 1.54
SmLINC04684-IBu 0 0.48 -0.86 3.35 3.38
SmLINC04747-IBu 0 6.14 4.80 9.94 4.77
SmLINC04769-IBu 0 1.36 2.94 5.73 3.10
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05171-IBu 0 -0.19 -0.55 5.90 3.90
SmLINC05258-IBu 0 0.71 -0.55 3.56 3.34
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC06010-IBu 0 1.91 2.45 5.62 4.62
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06145-IBu 0 1.04 -4.71 4.38 4.76
SmLINC06205-IBu 0 0.00 7.73 9.47 9.16
SmLINC06221-IBu 0 2.16 3.44 6.39 5.80
SmLINC06418-IBu 0 -2.45 2.43 6.45 5.75
SmLINC06444-IBu 0 -1.92 -0.19 3.94 3.05
SmLINC06449-IBu 0 2.33 4.31 7.30 6.63
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
SmLINC06536-IBu 0 -3.65 0.03 5.24 4.25
SmLINC06537-IBu 0 -3.92 -3.92 4.71 2.74
SmLINC06543-IBu 0 -0.52 0.39 3.89 3.37
Smp_068710.1 0 -0.37 1.37 3.96 4.03

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_068710.1 SmLINC00369-IBu 0.90 3.02e-06 1.00e-04
Smp_068710.1 SmLINC00477-IBu 0.85 5.86e-05 9.00e-04
Smp_068710.1 SmLINC00484-IBu 0.88 1.25e-05 3.00e-04
Smp_068710.1 SmLINC00548-IBu 0.88 1.39e-05 3.00e-04
Smp_068710.1 SmLINC00556-IBu -0.80 2.00e-04 2.90e-03
Smp_068710.1 SmLINC00633-IBu 0.87 2.11e-05 4.00e-04
Smp_068710.1 SmLINC00769-IBu 0.81 1.00e-04 2.20e-03
Smp_068710.1 SmLINC01084-IBu 0.85 4.18e-05 7.00e-04
Smp_068710.1 SmLINC01122-IBu 0.92 6.26e-07 3.69e-05
Smp_068710.1 SmLINC01139-IBu 0.87 2.06e-05 4.00e-04
Smp_068710.1 SmLINC01431-IBu 0.90 4.63e-06 1.00e-04
Smp_068710.1 SmLINC01435-IBu 0.86 2.69e-05 5.00e-04
Smp_068710.1 SmLINC01538-IBu 0.92 5.53e-07 3.38e-05
Smp_068710.1 SmLINC01569-IBu 0.92 5.51e-07 3.37e-05
Smp_068710.1 SmLINC01733-IBu 0.96 1.16e-08 2.36e-06
Smp_068710.1 SmLINC01746-IBu 0.92 8.10e-07 4.42e-05
Smp_068710.1 SmLINC02084-IBu 0.84 6.30e-05 1.00e-03
Smp_068710.1 SmLINC02255-IBu -0.83 1.00e-04 1.40e-03
Smp_068710.1 SmLINC02546-IBu 0.83 9.51e-05 1.30e-03
Smp_068710.1 SmLINC02657-IBu -0.83 9.21e-05 1.30e-03
Smp_068710.1 SmLINC03309-IBu 0.91 1.72e-06 7.54e-05
Smp_068710.1 SmLINC03542-IBu 0.84 7.90e-05 1.10e-03
Smp_068710.1 SmLINC03693-IBu 0.88 1.17e-05 2.00e-04
Smp_068710.1 SmLINC03849-IBu -0.80 2.00e-04 2.70e-03
Smp_068710.1 SmLINC04054-IBu 0.80 2.00e-04 2.80e-03
Smp_068710.1 SmLINC04345-IBu 0.83 9.41e-05 1.30e-03
Smp_068710.1 SmLINC04432-IBu 0.89 5.44e-06 1.00e-04
Smp_068710.1 SmLINC04475-IBu 0.89 5.93e-06 1.00e-04
Smp_068710.1 SmLINC04478-IBu 0.90 4.87e-06 1.00e-04
Smp_068710.1 SmLINC04521-IBu 0.93 3.35e-07 2.38e-05
Smp_068710.1 SmLINC04637-IBu 0.82 1.00e-04 1.70e-03
Smp_068710.1 SmLINC04663-IBu 0.88 1.32e-05 3.00e-04
Smp_068710.1 SmLINC04684-IBu 0.81 2.00e-04 2.60e-03
Smp_068710.1 SmLINC04747-IBu 0.80 3.00e-04 3.30e-03
Smp_068710.1 SmLINC04769-IBu 0.80 2.00e-04 2.80e-03
Smp_068710.1 SmLINC05147-IBu 0.88 1.26e-05 3.00e-04
Smp_068710.1 SmLINC05171-IBu 0.80 3.00e-04 3.20e-03
Smp_068710.1 SmLINC05258-IBu 0.84 6.50e-05 1.00e-03
Smp_068710.1 SmLINC05284-IBu -0.81 2.00e-04 2.60e-03
Smp_068710.1 SmLINC06010-IBu 0.87 2.46e-05 5.00e-04
Smp_068710.1 SmLINC06024-IBu 0.81 1.00e-04 2.20e-03
Smp_068710.1 SmLINC06145-IBu 0.81 2.00e-04 2.60e-03
Smp_068710.1 SmLINC06205-IBu 0.84 8.29e-05 1.20e-03
Smp_068710.1 SmLINC06221-IBu 0.90 4.33e-06 1.00e-04
Smp_068710.1 SmLINC06418-IBu 0.84 6.97e-05 1.00e-03
Smp_068710.1 SmLINC06444-IBu 0.89 5.73e-06 1.00e-04
Smp_068710.1 SmLINC06449-IBu 0.93 2.09e-07 1.71e-05
Smp_068710.1 SmLINC06535-IBu -0.82 1.00e-04 2.00e-03
Smp_068710.1 SmLINC06536-IBu 0.81 2.00e-04 2.70e-03
Smp_068710.1 SmLINC06537-IBu 0.82 1.00e-04 1.90e-03
Smp_068710.1 SmLINC06543-IBu 0.87 1.76e-05 4.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_014780.1 0 9.27 11.17 13.92 13.01
Smp_031040.1 0 8.57 0.03 12.35 12.40
Smp_034980.2 0 8.75 0.00 11.30 11.03
Smp_040970.2 0 9.27 9.42 14.46 14.83
Smp_045200.1 0 3.00 7.71 11.33 10.66
Smp_051210.3 0 3.15 11.52 13.74 13.72
Smp_055340.2 0 8.73 10.47 12.13 12.52
Smp_058140.3 0 6.20 8.66 11.88 11.12
Smp_068710.1 0 -0.37 1.37 3.96 4.03
Smp_079420.1 0 6.65 2.37 11.69 12.23
Smp_090140.1 0 2.57 9.09 11.94 12.46
Smp_141680.1 0 1.93 6.74 10.30 9.72
Smp_145400.1 0 4.59 7.69 11.32 11.39
Smp_150980.2 0 7.91 9.49 12.91 12.48
Smp_154190.1 0 -1.93 -1.93 10.13 8.88
Smp_172480.1 0 4.53 4.98 10.04 9.89
Smp_203090.1 0 0.00 0.00 10.35 10.67
Smp_205270.1 0 0.71 -0.40 10.02 9.83

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_014780.1 Smp_068710.1 0.92 1.15e-06 5.89e-05
Smp_031040.1 Smp_068710.1 0.92 6.32e-07 3.87e-05
Smp_034980.2 Smp_068710.1 0.91 2.21e-06 9.33e-05
Smp_068710.1 Smp_040970.2 0.94 9.85e-08 1.07e-05
Smp_068710.1 Smp_045200.1 0.92 5.87e-07 3.67e-05
Smp_068710.1 Smp_051210.3 0.95 3.93e-08 5.74e-06
Smp_068710.1 Smp_055340.2 0.93 4.43e-07 3.02e-05
Smp_058140.3 Smp_068710.1 0.91 1.36e-06 6.65e-05
Smp_068710.1 Smp_079420.1 0.91 2.23e-06 9.41e-05
Smp_090140.1 Smp_068710.1 0.90 4.55e-06 1.00e-04
Smp_141680.1 Smp_068710.1 0.90 3.58e-06 1.00e-04
Smp_068710.1 Smp_145400.1 0.91 1.54e-06 7.23e-05
Smp_150980.2 Smp_068710.1 0.93 2.63e-07 2.10e-05
Smp_154190.1 Smp_068710.1 0.90 3.34e-06 1.00e-04
Smp_172480.1 Smp_068710.1 0.94 1.00e-07 1.08e-05
Smp_203090.1 Smp_068710.1 0.91 1.44e-06 6.90e-05
Smp_068710.1 Smp_205270.1 0.92 6.12e-07 3.78e-05