Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_068700.1 Data


Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC03927-IBu 0 0.00 3.30 7.68 8.27
SmLINC03930-IBu 0 -0.18 -2.11 -8.92 -4.64
Smp_068700.1 0 5.15 3.83 7.70 9.05

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_068700.1 SmLINC03927-IBu 0.91 2.45e-06 7.00e-05
Smp_068700.1 SmLINC03930-IBu -0.59 1.95e-02 5.64e-02
Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00007-IBu 0 2.71 2.19 5.12 7.33
SmLINC00266-IBu 0 2.25 3.99 6.14 6.95
SmLINC00376-IBu 0 1.87 -0.39 3.34 3.93
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01520-IBu 0 0.00 0.00 7.35 9.60
SmLINC02029-IBu 0 0.00 0.00 6.82 9.29
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02540-IBu 0 0.00 0.00 8.87 10.81
SmLINC02545-IBu 0 3.54 1.98 7.53 8.45
SmLINC02577-IBu 0 0.00 1.73 7.37 9.60
SmLINC02776-IBu 0 4.33 2.79 6.19 9.25
SmLINC02786-IBu 0 0.00 1.47 4.70 9.60
SmLINC03108-IBu 0 1.12 -0.64 3.64 3.93
SmLINC03927-IBu 0 0.00 3.30 7.68 8.27
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC05684-IBu 0 0.98 2.20 5.42 8.30
Smp_068700.1 0 5.15 3.83 7.70 9.05

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_068700.1 SmLINC00004-IBu 0.81 2.00e-04 2.30e-03
Smp_068700.1 SmLINC00007-IBu 0.89 5.30e-06 1.00e-04
Smp_068700.1 SmLINC00266-IBu 0.91 2.46e-06 9.75e-05
Smp_068700.1 SmLINC00376-IBu 0.81 2.00e-04 2.70e-03
Smp_068700.1 SmLINC00525-IBu 0.82 1.00e-04 1.70e-03
Smp_068700.1 SmLINC01084-IBu 0.81 1.00e-04 2.20e-03
Smp_068700.1 SmLINC01520-IBu 0.88 1.00e-05 2.00e-04
Smp_068700.1 SmLINC02029-IBu 0.83 1.00e-04 1.60e-03
Smp_068700.1 SmLINC02084-IBu 0.86 3.75e-05 6.00e-04
Smp_068700.1 SmLINC02539-IBu 0.89 8.36e-06 2.00e-04
Smp_068700.1 SmLINC02540-IBu 0.88 1.17e-05 2.00e-04
Smp_068700.1 SmLINC02545-IBu 0.89 5.59e-06 1.00e-04
Smp_068700.1 SmLINC02577-IBu 0.86 2.73e-05 5.00e-04
Smp_068700.1 SmLINC02776-IBu 0.84 6.23e-05 1.00e-03
Smp_068700.1 SmLINC02786-IBu 0.80 3.00e-04 3.20e-03
Smp_068700.1 SmLINC03108-IBu 0.83 1.00e-04 1.60e-03
Smp_068700.1 SmLINC03927-IBu 0.91 2.45e-06 9.71e-05
Smp_068700.1 SmLINC04421-IBu 0.86 3.76e-05 6.00e-04
Smp_068700.1 SmLINC05289-IBu 0.82 1.00e-04 1.70e-03
Smp_068700.1 SmLINC05604-IBu 0.87 2.09e-05 4.00e-04
Smp_068700.1 SmLINC05684-IBu 0.81 2.00e-04 2.30e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_037720.1 0 2.04 2.35 9.15 11.20
Smp_068700.1 0 5.15 3.83 7.70 9.05
Smp_196830.1 0 -0.76 0.59 8.97 10.89

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_037720.1 Smp_068700.1 0.90 3.68e-06 1.00e-04
Smp_196830.1 Smp_068700.1 0.91 1.84e-06 8.22e-05