Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_068270.3 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC01316-IBu 0 -0.35 0.57 -11.60 -4.95
SmLINC01429-IBu 0 1.94 -0.56 -4.06 -6.10
SmLINC01979-IBu 0 1.86 0.63 -5.36 -5.36
SmLINC02646-IBu 0 0.70 0.79 -6.84 -2.55
SmLINC03111-IBu 0 3.25 1.95 -5.91 -5.91
SmLINC03116-IBu 0 3.51 0.92 -2.09 -5.82
SmLINC03395-IBu 0 1.75 0.29 -4.35 -2.74
SmLINC03443-IBu 0 2.85 1.67 -0.40 -9.21
SmLINC04074-IBu 0 7.29 6.66 0.00 0.00
SmLINC06646-IBu 0 1.59 1.70 -7.49 -7.49
Smp_068270.3 0 4.48 4.31 -7.70 1.13

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_068270.3 SmLINC01316-IBu 0.81 1.00e-04 2.20e-03
Smp_068270.3 SmLINC01429-IBu 0.85 4.31e-05 7.00e-04
Smp_068270.3 SmLINC01979-IBu 0.92 9.61e-07 4.98e-05
Smp_068270.3 SmLINC02646-IBu 0.90 3.71e-06 1.00e-04
Smp_068270.3 SmLINC03111-IBu 0.90 4.27e-06 1.00e-04
Smp_068270.3 SmLINC03116-IBu 0.80 2.00e-04 3.00e-03
Smp_068270.3 SmLINC03395-IBu 0.82 1.00e-04 1.80e-03
Smp_068270.3 SmLINC03443-IBu 0.84 7.81e-05 1.10e-03
Smp_068270.3 SmLINC04074-IBu 0.93 4.32e-07 2.84e-05
Smp_068270.3 SmLINC06646-IBu 0.97 1.83e-09 6.97e-07
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_017650.1 0 9.51 10.68 -7.98 0.00
Smp_059340.3 0 0.76 1.23 -11.82 -11.82
Smp_068270.3 0 4.48 4.31 -7.70 1.13
Smp_168800.1 0 0.13 -0.51 -10.46 -10.46

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_017650.1 Smp_068270.3 0.90 2.55e-06 1.00e-04
Smp_059340.3 Smp_068270.3 0.94 1.54e-07 1.46e-05
Smp_168800.1 Smp_068270.3 0.90 2.91e-06 1.00e-04