Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_067980.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
SmLINC06892-IBu 0 -2.10 -3.44 -12.52 -12.52
Smp_067980.1 0 -0.94 -11.67 -4.00 -4.18

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_067980.1 SmLINC06535-IBu 0.83 1.00e-04 1.40e-03
Smp_067980.1 SmLINC06892-IBu 0.86 3.73e-05 6.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02455-IBu 0 -0.81 -2.44 -4.53 -4.60
Smp_004230.1 0 -1.29 -9.36 -9.36 -9.36
Smp_008370.1 0 -0.81 -6.37 -2.14 -2.89
Smp_032970.1 0 -0.24 -2.98 -11.57 -7.79
Smp_056680.2 0 0.01 -3.20 -6.32 -3.44
Smp_056680.3 0 0.01 -3.20 -6.32 -3.44
Smp_061580.1 0 -1.55 -4.87 -3.14 -2.48
Smp_067980.1 0 -0.94 -11.67 -4.00 -4.18
Smp_077690.1 0 -0.88 -2.98 -12.11 -12.11
Smp_085290.3 0 -2.11 -9.33 -13.07 -9.78
Smp_100790.1 0 -1.29 -9.36 -9.36 -9.36
Smp_113760.1 0 -1.77 -5.35 -7.90 -7.26
Smp_114740.1 0 -1.29 -9.36 -9.36 -9.36
Smp_140680.2 0 -1.06 -11.75 -8.40 -8.18
Smp_167350.1 0 -0.80 -1.92 -3.39 -6.34
Smp_167680.2 0 -0.35 -3.78 -5.67 -5.45
Smp_168080.2 0 -1.01 -12.06 -12.06 -12.06
Smp_174520.1 0 -1.49 -5.54 -1.86 -3.92
Smp_182770.1 0 -1.46 -4.03 -8.25 -8.62
Smp_187590.1 0 -0.60 -3.82 -4.10 -3.89
Smp_188900.1 0 -1.35 -4.02 -11.76 -11.76
Smp_195060.1 0 -0.69 -4.00 -2.76 -3.57
Smp_195070.1 0 -1.13 -9.73 -18.26 -16.31
Smp_200390.1 0 0.15 -1.24 -5.66 -5.58
Smp_201900.1 0 -0.73 -2.99 -4.99 -3.71
Smp_202140.1 0 -1.27 -3.64 -10.44 -10.44
Smp_203770.1 0 -0.07 -1.61 -3.55 -6.15

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_067980.1 SmLINC02455-IBu 0.90 4.03e-06 1.00e-04
Smp_004230.1 Smp_067980.1 0.95 5.29e-08 7.01e-06
Smp_008370.1 Smp_067980.1 0.91 1.23e-06 6.17e-05
Smp_032970.1 Smp_067980.1 0.90 4.26e-06 1.00e-04
Smp_056680.2 Smp_067980.1 0.91 2.07e-06 8.92e-05
Smp_056680.3 Smp_067980.1 0.91 2.07e-06 8.92e-05
Smp_067980.1 Smp_061580.1 0.94 1.22e-07 1.24e-05
Smp_077690.1 Smp_067980.1 0.90 4.02e-06 1.00e-04
Smp_067980.1 Smp_085290.3 0.90 3.44e-06 1.00e-04
Smp_100790.1 Smp_067980.1 0.95 5.29e-08 7.01e-06
Smp_067980.1 Smp_113760.1 0.93 3.58e-07 2.60e-05
Smp_114740.1 Smp_067980.1 0.95 5.29e-08 7.01e-06
Smp_067980.1 Smp_140680.2 0.97 2.39e-10 2.03e-07
Smp_067980.1 Smp_167350.1 0.91 1.97e-06 8.63e-05
Smp_067980.1 Smp_167680.2 0.90 4.47e-06 1.00e-04
Smp_067980.1 Smp_168080.2 0.93 3.06e-07 2.34e-05
Smp_174520.1 Smp_067980.1 0.91 1.49e-06 7.09e-05
Smp_067980.1 Smp_182770.1 0.91 1.99e-06 8.68e-05
Smp_067980.1 Smp_187590.1 0.92 9.74e-07 5.23e-05
Smp_188900.1 Smp_067980.1 0.94 6.48e-08 8.05e-06
Smp_195060.1 Smp_067980.1 0.93 2.21e-07 1.86e-05
Smp_067980.1 Smp_195070.1 0.92 1.08e-06 5.66e-05
Smp_200390.1 Smp_067980.1 0.90 4.43e-06 1.00e-04
Smp_201900.1 Smp_067980.1 0.92 7.39e-07 4.31e-05
Smp_202140.1 Smp_067980.1 0.95 5.72e-08 7.39e-06
Smp_067980.1 Smp_203770.1 0.94 1.35e-07 1.33e-05