Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_067590.2 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00007-IBu 0 2.71 2.19 5.12 7.33
SmLINC01520-IBu 0 0.00 0.00 7.35 9.60
SmLINC02029-IBu 0 0.00 0.00 6.82 9.29
SmLINC02394-IBu 0 0.00 0.00 9.18 10.51
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02540-IBu 0 0.00 0.00 8.87 10.81
SmLINC02577-IBu 0 0.00 1.73 7.37 9.60
SmLINC02776-IBu 0 4.33 2.79 6.19 9.25
SmLINC02783-IBu 0 0.00 3.67 6.24 9.23
SmLINC02786-IBu 0 0.00 1.47 4.70 9.60
SmLINC03326-IBu 0 1.89 -2.65 4.69 6.66
SmLINC04237-IBu 0 0.00 0.00 3.71 7.42
SmLINC04627-IBu 0 0.00 0.00 6.80 10.25
SmLINC05684-IBu 0 0.98 2.20 5.42 8.30
Smp_067590.2 0 0.00 0.00 0.99 9.96

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_067590.2 SmLINC00001-IBu 0.80 2.00e-04 2.80e-03
Smp_067590.2 SmLINC00007-IBu 0.89 5.41e-06 1.00e-04
Smp_067590.2 SmLINC01520-IBu 0.86 2.82e-05 5.00e-04
Smp_067590.2 SmLINC02029-IBu 0.82 1.00e-04 2.00e-03
Smp_067590.2 SmLINC02394-IBu 0.80 2.00e-04 2.90e-03
Smp_067590.2 SmLINC02539-IBu 0.86 3.92e-05 7.00e-04
Smp_067590.2 SmLINC02540-IBu 0.89 7.06e-06 2.00e-04
Smp_067590.2 SmLINC02577-IBu 0.89 7.73e-06 2.00e-04
Smp_067590.2 SmLINC02776-IBu 0.94 1.36e-07 1.27e-05
Smp_067590.2 SmLINC02783-IBu 0.93 2.60e-07 1.99e-05
Smp_067590.2 SmLINC02786-IBu 0.87 2.34e-05 4.00e-04
Smp_067590.2 SmLINC03326-IBu 0.88 9.35e-06 2.00e-04
Smp_067590.2 SmLINC04237-IBu 0.96 8.79e-09 1.96e-06
Smp_067590.2 SmLINC04627-IBu 0.94 1.45e-07 1.33e-05
Smp_067590.2 SmLINC05684-IBu 0.90 3.69e-06 1.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_004420.3 0 0.00 5.84 10.64 14.52
Smp_007950.1 0 5.54 7.26 12.66 14.89
Smp_067590.2 0 0.00 0.00 0.99 9.96
Smp_105450.1 0 4.55 9.19 10.26 14.94
Smp_123880.1 0 1.71 4.05 9.88 12.08
Smp_126340.1 0 0.00 2.97 7.05 12.21
Smp_136730.1 0 1.59 3.88 8.90 11.96
Smp_137700.1 0 2.72 4.76 8.79 13.14
Smp_137720.1 0 0.96 3.51 9.34 11.95
Smp_139160.1 0 1.79 5.17 7.78 10.90
Smp_139240.1 0 1.42 4.34 10.58 13.09
Smp_163700.1 0 -1.15 0.72 8.02 10.29
Smp_187140.1 0 1.31 4.33 10.17 12.62
Smp_194380.1 0 2.98 2.11 7.89 10.14
Smp_194910.1 0 0.37 1.92 8.43 11.13
Smp_205580.1 0 2.85 4.80 9.78 12.43

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_004420.3 Smp_067590.2 0.92 1.08e-06 5.65e-05
Smp_007950.1 Smp_067590.2 0.90 2.64e-06 1.00e-04
Smp_067590.2 Smp_105450.1 0.91 1.83e-06 8.17e-05
Smp_123880.1 Smp_067590.2 0.90 4.07e-06 1.00e-04
Smp_126340.1 Smp_067590.2 0.90 2.89e-06 1.00e-04
Smp_067590.2 Smp_136730.1 0.91 1.32e-06 6.49e-05
Smp_067590.2 Smp_137700.1 0.91 1.54e-06 7.25e-05
Smp_137720.1 Smp_067590.2 0.92 8.56e-07 4.78e-05
Smp_139160.1 Smp_067590.2 0.90 2.86e-06 1.00e-04
Smp_067590.2 Smp_139240.1 0.91 1.72e-06 7.83e-05
Smp_067590.2 Smp_163700.1 0.92 1.10e-06 5.73e-05
Smp_067590.2 Smp_187140.1 0.90 3.83e-06 1.00e-04
Smp_194380.1 Smp_067590.2 0.91 1.78e-06 8.02e-05
Smp_067590.2 Smp_194910.1 0.90 4.19e-06 1.00e-04
Smp_067590.2 Smp_205580.1 0.92 1.11e-06 5.75e-05