Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_066010.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC06892-IBu 0 -2.10 -3.44 -12.52 -12.52
Smp_066010.1 0 -2.34 -10.90 -6.48 -4.88

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_066010.1 SmLINC06892-IBu 0.97 2.00e-09 7.39e-07
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC06892-IBu 0 -2.10 -3.44 -12.52 -12.52
Smp_005860.3 0 -2.06 -4.24 -7.23 -8.92
Smp_007900.2 0 -2.04 -7.23 -2.98 -2.21
Smp_009390.1 0 -2.49 -4.72 -3.30 -3.76
Smp_009650.2 0 -7.49 -7.79 -8.95 -11.71
Smp_032990.1 0 -1.53 -9.49 -13.75 -8.21
Smp_036400.2 0 -2.63 -11.95 -8.03 -7.25
Smp_038560.6 0 -3.08 -4.79 -5.99 -7.18
Smp_042270.1 0 -6.69 -4.66 -8.17 -6.53
Smp_046090.1 0 -4.19 -6.28 -7.15 -8.65
Smp_061580.1 0 -1.55 -4.87 -3.14 -2.48
Smp_061940.1 0 -2.48 -6.54 -5.15 -5.02
Smp_066010.1 0 -2.34 -10.90 -6.48 -4.88
Smp_084400.4 0 -2.64 -4.06 -5.30 -7.16
Smp_085290.3 0 -2.11 -9.33 -13.07 -9.78
Smp_105610.1 0 -3.66 -7.36 -5.82 -7.17
Smp_113710.1 0 -3.35 -5.78 -3.90 -2.82
Smp_113760.1 0 -1.77 -5.35 -7.90 -7.26
Smp_140680.2 0 -1.06 -11.75 -8.40 -8.18
Smp_148800.1 0 -3.26 -5.77 -5.61 -4.70
Smp_149190.1 0 -3.08 -5.94 -9.47 -9.18
Smp_150690.2 0 -2.07 -12.58 -12.58 -12.58
Smp_184460.1 0 -2.24 -5.26 -13.63 -13.63
Smp_185360.1 0 -2.43 -5.85 -12.83 -12.83
Smp_186610.1 0 -3.09 -6.92 -6.26 -7.07
Smp_188600.1 0 -1.05 -3.54 -4.81 -5.04
Smp_190320.1 0 -2.26 -2.78 -8.01 -9.33
Smp_190590.1 0 -2.59 -2.98 -7.31 -8.64
Smp_190940.1 0 -3.61 -6.81 -3.30 -6.81
Smp_192880.1 0 -2.57 -3.41 -5.24 -6.71
Smp_199840.1 0 -1.81 -3.67 -4.48 -5.82
Smp_202140.1 0 -1.27 -3.64 -10.44 -10.44
Smp_202700.1 0 -2.94 -2.50 -4.90 -6.94
Smp_206150.1 0 -1.95 -4.12 -11.47 -11.47

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_066010.1 SmLINC06892-IBu 0.97 2.00e-09 7.96e-07
Smp_066010.1 Smp_005860.3 0.94 1.69e-07 1.55e-05
Smp_007900.2 Smp_066010.1 0.96 8.34e-09 2.02e-06
Smp_009390.1 Smp_066010.1 0.92 7.42e-07 4.32e-05
Smp_066010.1 Smp_009650.2 0.92 6.56e-07 3.97e-05
Smp_066010.1 Smp_032990.1 0.93 2.85e-07 2.22e-05
Smp_036400.2 Smp_066010.1 0.92 5.85e-07 3.66e-05
Smp_066010.1 Smp_038560.6 0.93 3.52e-07 2.58e-05
Smp_042270.1 Smp_066010.1 0.92 6.45e-07 3.92e-05
Smp_066010.1 Smp_046090.1 0.93 3.36e-07 2.49e-05
Smp_066010.1 Smp_061580.1 0.91 1.93e-06 8.50e-05
Smp_061940.1 Smp_066010.1 0.93 4.09e-07 2.85e-05
Smp_066010.1 Smp_084400.4 0.90 2.80e-06 1.00e-04
Smp_066010.1 Smp_085290.3 0.94 9.76e-08 1.06e-05
Smp_066010.1 Smp_105610.1 0.93 4.95e-07 3.26e-05
Smp_066010.1 Smp_113710.1 0.94 1.50e-07 1.43e-05
Smp_066010.1 Smp_113760.1 0.95 1.73e-08 3.29e-06
Smp_066010.1 Smp_140680.2 0.91 1.23e-06 6.18e-05
Smp_148800.1 Smp_066010.1 0.91 2.40e-06 9.91e-05
Smp_149190.1 Smp_066010.1 0.95 3.86e-08 5.67e-06
Smp_150690.2 Smp_066010.1 0.92 7.61e-07 4.40e-05
Smp_066010.1 Smp_184460.1 0.95 5.75e-08 7.43e-06
Smp_066010.1 Smp_185360.1 0.92 5.39e-07 3.46e-05
Smp_066010.1 Smp_186610.1 0.95 1.72e-08 3.28e-06
Smp_188600.1 Smp_066010.1 0.94 8.71e-08 9.84e-06
Smp_190320.1 Smp_066010.1 0.96 2.55e-09 9.31e-07
Smp_066010.1 Smp_190590.1 0.92 7.43e-07 4.33e-05
Smp_190940.1 Smp_066010.1 0.92 8.35e-07 4.70e-05
Smp_192880.1 Smp_066010.1 0.94 1.86e-07 1.65e-05
Smp_066010.1 Smp_199840.1 0.95 1.63e-08 3.17e-06
Smp_202140.1 Smp_066010.1 0.90 4.42e-06 1.00e-04
Smp_202700.1 Smp_066010.1 0.92 9.09e-07 4.98e-05
Smp_206150.1 Smp_066010.1 0.92 9.88e-07 5.29e-05