Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_065580.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02678-IBu 0 -3.18 -2.40 -3.22 -5.56
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06892-IBu 0 -2.10 -3.44 -12.52 -12.52
Smp_065580.1 0 -2.41 -12.61 -6.08 -5.45

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_065580.1 SmLINC02678-IBu 0.83 9.64e-05 1.30e-03
Smp_065580.1 SmLINC06128-IBu 0.87 2.42e-05 5.00e-04
Smp_065580.1 SmLINC06892-IBu 0.83 1.00e-04 1.50e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC05095-IBu 0 -2.89 -9.14 -9.14 -9.14
Smp_002930.1 0 -1.91 -4.36 -9.53 -9.53
Smp_005860.1 0 -1.88 -5.14 -8.12 -7.71
Smp_005860.3 0 -2.06 -4.24 -7.23 -8.92
Smp_009390.1 0 -2.49 -4.72 -3.30 -3.76
Smp_022430.1 0 -3.19 -4.81 -4.61 -4.50
Smp_032990.1 0 -1.53 -9.49 -13.75 -8.21
Smp_033610.1 0 -2.04 -4.32 -5.07 -4.63
Smp_038560.6 0 -3.08 -4.79 -5.99 -7.18
Smp_046090.1 0 -4.19 -6.28 -7.15 -8.65
Smp_061940.1 0 -2.48 -6.54 -5.15 -5.02
Smp_065580.1 0 -2.41 -12.61 -6.08 -5.45
Smp_102670.1 0 -2.95 -8.79 -12.62 -12.62
Smp_105610.1 0 -3.66 -7.36 -5.82 -7.17
Smp_108050.1 0 -2.06 -3.07 -8.81 -9.10
Smp_113710.1 0 -3.35 -5.78 -3.90 -2.82
Smp_113760.1 0 -1.77 -5.35 -7.90 -7.26
Smp_133770.1 0 -4.18 -7.68 -11.38 -11.45
Smp_145340.1 0 -2.62 -9.51 -6.28 -7.06
Smp_164850.1 0 -2.43 -3.75 -2.48 -4.46
Smp_178240.1 0 -3.79 -9.33 -8.87 -11.00
Smp_179640.1 0 -2.62 -9.51 -6.28 -7.06
Smp_182770.1 0 -1.46 -4.03 -8.25 -8.62
Smp_183420.1 0 -2.62 -9.51 -6.28 -7.06
Smp_184460.1 0 -2.24 -5.26 -13.63 -13.63
Smp_185360.1 0 -2.43 -5.85 -12.83 -12.83
Smp_186610.1 0 -3.09 -6.92 -6.26 -7.07
Smp_205900.1 0 -3.56 -6.12 -5.80 -6.36
Smp_206150.1 0 -1.95 -4.12 -11.47 -11.47

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_065580.1 SmLINC05095-IBu 0.92 6.78e-07 4.06e-05
Smp_002930.1 Smp_065580.1 0.95 6.02e-08 7.66e-06
Smp_005860.1 Smp_065580.1 0.92 8.95e-07 4.93e-05
Smp_065580.1 Smp_005860.3 0.95 1.85e-08 3.45e-06
Smp_009390.1 Smp_065580.1 0.92 6.96e-07 4.13e-05
Smp_065580.1 Smp_022430.1 0.90 3.08e-06 1.00e-04
Smp_065580.1 Smp_032990.1 0.90 2.54e-06 1.00e-04
Smp_033610.1 Smp_065580.1 0.90 4.32e-06 1.00e-04
Smp_038560.6 Smp_065580.1 0.92 5.80e-07 3.64e-05
Smp_065580.1 Smp_046090.1 0.90 3.42e-06 1.00e-04
Smp_061940.1 Smp_065580.1 0.93 3.81e-07 2.72e-05
Smp_102670.1 Smp_065580.1 0.91 2.19e-06 9.29e-05
Smp_065580.1 Smp_105610.1 0.92 5.85e-07 3.67e-05
Smp_065580.1 Smp_108050.1 0.90 3.89e-06 1.00e-04
Smp_113710.1 Smp_065580.1 0.91 1.46e-06 6.98e-05
Smp_065580.1 Smp_113760.1 0.90 3.18e-06 1.00e-04
Smp_065580.1 Smp_133770.1 0.90 4.73e-06 1.00e-04
Smp_145340.1 Smp_065580.1 0.90 4.00e-06 1.00e-04
Smp_164850.1 Smp_065580.1 0.90 3.26e-06 1.00e-04
Smp_178240.1 Smp_065580.1 0.91 2.31e-06 9.62e-05
Smp_065580.1 Smp_179640.1 0.90 4.00e-06 1.00e-04
Smp_065580.1 Smp_182770.1 0.90 3.16e-06 1.00e-04
Smp_065580.1 Smp_183420.1 0.90 4.00e-06 1.00e-04
Smp_065580.1 Smp_184460.1 0.94 1.22e-07 1.24e-05
Smp_185360.1 Smp_065580.1 0.92 5.76e-07 3.63e-05
Smp_065580.1 Smp_186610.1 0.93 4.78e-07 3.18e-05
Smp_205900.1 Smp_065580.1 0.92 8.05e-07 4.58e-05
Smp_206150.1 Smp_065580.1 0.94 8.34e-08 9.56e-06