Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_064020.6 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC01122-IBu 0 0.00 0.00 6.36 6.32
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01538-IBu 0 0.00 3.62 10.85 10.43
SmLINC01733-IBu 0 0.89 2.09 5.78 5.68
SmLINC01746-IBu 0 -3.80 -0.66 2.43 2.13
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC04432-IBu 0 0.66 2.72 5.35 5.03
SmLINC04637-IBu 0 5.61 0.00 9.87 8.40
Smp_064020.6 0 0.00 0.00 9.06 9.58

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_064020.6 SmLINC01122-IBu 0.81 2.00e-04 2.70e-03
Smp_064020.6 SmLINC01431-IBu 0.84 7.41e-05 1.10e-03
Smp_064020.6 SmLINC01538-IBu 0.81 1.00e-04 2.30e-03
Smp_064020.6 SmLINC01733-IBu 0.90 4.43e-06 1.00e-04
Smp_064020.6 SmLINC01746-IBu 0.82 1.00e-04 2.00e-03
Smp_064020.6 SmLINC02546-IBu 0.81 2.00e-04 2.40e-03
Smp_064020.6 SmLINC04432-IBu 0.82 1.00e-04 2.10e-03
Smp_064020.6 SmLINC04637-IBu 0.81 2.00e-04 2.40e-03