Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_063650.3 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00372-IBu 0 1.42 3.02 -1.83 -2.95
SmLINC01316-IBu 0 -0.35 0.57 -11.60 -4.95
SmLINC02646-IBu 0 0.70 0.79 -6.84 -2.55
SmLINC04430-IBu 0 1.35 4.06 1.40 0.01
SmLINC05559-IBu 0 -0.72 2.59 -1.58 -1.98
SmLINC06700-IBu 0 2.95 4.73 1.69 -0.46
SmLINC06836-IBu 0 5.91 8.23 0.00 0.00
Smp_063650.3 0 8.82 10.72 0.00 0.00

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_063650.3 SmLINC00372-IBu 0.91 1.37e-06 6.43e-05
Smp_063650.3 SmLINC01316-IBu 0.82 1.00e-04 1.90e-03
Smp_063650.3 SmLINC02646-IBu 0.87 2.37e-05 4.00e-04
Smp_063650.3 SmLINC04430-IBu 0.88 1.46e-05 3.00e-04
Smp_063650.3 SmLINC05559-IBu 0.89 5.41e-06 1.00e-04
Smp_063650.3 SmLINC06700-IBu 0.98 4.84e-11 6.72e-08
Smp_063650.3 SmLINC06836-IBu 0.94 1.14e-07 1.12e-05
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00192-IBu 0 0.61 2.35 -8.28 -4.07
SmLINC00372-IBu 0 1.42 3.02 -1.83 -2.95
SmLINC00513-IBu 0 6.74 8.35 0.00 3.11
SmLINC01002-IBu 0 3.82 5.68 -2.26 -2.26
SmLINC03132-IBu 0 3.76 4.91 1.54 -0.47
SmLINC03924-IBu 0 0.69 2.22 -1.76 -2.59
SmLINC04215-IBu 0 6.59 8.42 5.71 3.29
SmLINC05348-IBu 0 -0.21 0.48 -2.93 -5.35
SmLINC06048-IBu 0 0.79 1.93 -4.19 -7.12
SmLINC06241-IBu 0 2.77 5.19 0.64 -7.79
SmLINC06700-IBu 0 2.95 4.73 1.69 -0.46
SmLINC06836-IBu 0 5.91 8.23 0.00 0.00
SmLINC07017-IBu 0 2.51 4.73 -1.06 -1.03
Smp_008910.1 0 -1.29 0.24 -6.54 -6.54
Smp_017650.1 0 9.51 10.68 -7.98 0.00
Smp_018590.1 0 0.89 1.74 -2.48 -5.97
Smp_019940.5 0 1.01 3.12 -6.73 1.95
Smp_024820.1 0 4.10 4.75 1.46 1.82
Smp_027990.1 0 1.00 2.03 -4.13 -5.46
Smp_031770.3 0 0.52 1.55 -9.48 -9.48
Smp_032120.1 0 0.03 1.02 -10.65 -10.65
Smp_034840.1 0 12.23 13.88 0.00 0.00
Smp_035200.2 0 2.64 4.29 0.34 1.53
Smp_036270.3 0 1.18 2.21 -10.17 -10.17
Smp_049600.3 0 1.80 2.94 -9.17 -1.90
Smp_052290.1 0 1.68 2.86 -1.36 -2.94
Smp_062420.1 0 1.52 4.05 -0.25 -0.83
Smp_062610.2 0 -1.05 -0.32 -6.81 -10.38
Smp_063650.3 0 8.82 10.72 0.00 0.00
Smp_076040.2 0 -0.64 1.55 -9.83 -9.83
Smp_099160.4 0 11.96 13.30 11.03 12.32
Smp_099560.1 0 8.15 8.89 -2.27 -2.27
Smp_103930.1 0 0.87 2.20 -7.48 0.71
Smp_112520.1 0 1.59 3.68 -6.44 -6.44
Smp_120740.1 0 -0.36 1.05 -4.86 -4.75
Smp_136120.1 0 5.65 6.93 4.13 3.70
Smp_138140.1 0 2.02 2.69 -3.31 -2.76
Smp_139170.1 0 2.45 4.33 0.78 0.06
Smp_139940.1 0 3.07 4.50 -0.39 -2.02
Smp_143180.1 0 1.31 2.18 -4.27 -1.25
Smp_148110.1 0 1.60 3.38 -2.98 -3.24
Smp_149870.1 0 0.08 0.15 -3.14 -8.77
Smp_152900.1 0 -0.24 0.96 -3.27 -3.63
Smp_153650.1 0 -0.02 1.72 -2.93 -3.55
Smp_157280.1 0 4.32 5.40 2.85 1.60
Smp_159070.4 0 3.29 5.54 2.90 0.83
Smp_159380.1 0 0.56 1.21 -4.02 -3.82
Smp_174750.1 0 1.35 2.65 -1.87 -1.39
Smp_175300.1 0 6.82 9.29 5.85 5.56
Smp_180050.1 0 1.06 0.86 -2.29 -5.29
Smp_180630.1 0 0.12 1.09 -6.32 -9.26
Smp_184370.1 0 -1.11 0.66 -3.32 -4.28
Smp_196410.1 0 0.98 1.80 -3.57 -2.94

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_063650.3 SmLINC00192-IBu 0.90 3.32e-06 1.00e-04
Smp_063650.3 SmLINC00372-IBu 0.91 1.37e-06 6.68e-05
Smp_063650.3 SmLINC00513-IBu 0.92 8.07e-07 4.59e-05
Smp_063650.3 SmLINC01002-IBu 0.97 2.93e-10 2.32e-07
Smp_063650.3 SmLINC03132-IBu 0.91 1.37e-06 6.69e-05
Smp_063650.3 SmLINC03924-IBu 0.90 4.52e-06 1.00e-04
Smp_063650.3 SmLINC04215-IBu 0.91 2.25e-06 9.47e-05
Smp_063650.3 SmLINC05348-IBu 0.93 2.83e-07 2.21e-05
Smp_063650.3 SmLINC06048-IBu 0.93 2.64e-07 2.11e-05
Smp_063650.3 SmLINC06241-IBu 0.97 2.38e-10 2.03e-07
Smp_063650.3 SmLINC06700-IBu 0.98 4.84e-11 7.37e-08
Smp_063650.3 SmLINC06836-IBu 0.94 1.14e-07 1.18e-05
Smp_063650.3 SmLINC07017-IBu 0.94 1.68e-07 1.54e-05
Smp_063650.3 Smp_008910.1 0.97 4.50e-10 3.05e-07
Smp_063650.3 Smp_017650.1 0.90 3.94e-06 1.00e-04
Smp_063650.3 Smp_018590.1 0.93 2.34e-07 1.94e-05
Smp_063650.3 Smp_019940.5 0.96 6.71e-09 1.75e-06
Smp_024820.1 Smp_063650.3 0.96 5.53e-09 1.54e-06
Smp_063650.3 Smp_027990.1 0.91 1.23e-06 6.20e-05
Smp_063650.3 Smp_031770.3 0.96 7.74e-09 1.92e-06
Smp_063650.3 Smp_032120.1 0.93 2.13e-07 1.82e-05
Smp_063650.3 Smp_034840.1 0.93 3.14e-07 2.38e-05
Smp_063650.3 Smp_035200.2 0.99 7.43e-14 1.35e-09
Smp_063650.3 Smp_036270.3 0.94 9.65e-08 1.05e-05
Smp_049600.3 Smp_063650.3 0.92 6.66e-07 4.01e-05
Smp_063650.3 Smp_052290.1 0.90 3.11e-06 1.00e-04
Smp_063650.3 Smp_062420.1 0.94 1.13e-07 1.17e-05
Smp_062610.2 Smp_063650.3 0.91 1.53e-06 7.21e-05
Smp_063650.3 Smp_076040.2 0.92 1.18e-06 6.01e-05
Smp_063650.3 Smp_099160.4 0.90 3.49e-06 1.00e-04
Smp_063650.3 Smp_099560.1 0.92 6.43e-07 3.91e-05
Smp_103930.1 Smp_063650.3 0.96 9.54e-09 2.21e-06
Smp_063650.3 Smp_112520.1 0.90 3.25e-06 1.00e-04
Smp_120740.1 Smp_063650.3 0.91 1.53e-06 7.22e-05
Smp_063650.3 Smp_136120.1 0.97 1.94e-10 1.78e-07
Smp_063650.3 Smp_138140.1 0.93 4.02e-07 2.82e-05
Smp_063650.3 Smp_139170.1 0.93 4.50e-07 3.05e-05
Smp_063650.3 Smp_139940.1 0.92 8.68e-07 4.83e-05
Smp_063650.3 Smp_143180.1 0.93 2.08e-07 1.78e-05
Smp_063650.3 Smp_148110.1 0.91 1.35e-06 6.60e-05
Smp_149870.1 Smp_063650.3 0.95 2.96e-08 4.74e-06
Smp_063650.3 Smp_152900.1 0.90 3.57e-06 1.00e-04
Smp_063650.3 Smp_153650.1 0.93 3.15e-07 2.38e-05
Smp_063650.3 Smp_157280.1 0.94 6.76e-08 8.28e-06
Smp_063650.3 Smp_159070.4 0.92 9.69e-07 5.22e-05
Smp_063650.3 Smp_159380.1 0.91 1.42e-06 6.84e-05
Smp_174750.1 Smp_063650.3 0.97 5.56e-10 3.49e-07
Smp_063650.3 Smp_175300.1 0.91 2.11e-06 9.03e-05
Smp_063650.3 Smp_180050.1 0.91 1.86e-06 8.28e-05
Smp_180630.1 Smp_063650.3 0.94 8.22e-08 9.46e-06
Smp_063650.3 Smp_184370.1 0.95 1.56e-08 3.07e-06
Smp_196410.1 Smp_063650.3 0.92 7.93e-07 4.53e-05