Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_063520.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC02029-IBu 0 0.00 0.00 6.82 9.29
SmLINC02376-IBu 0 0.00 0.00 5.89 7.89
SmLINC02786-IBu 0 0.00 1.47 4.70 9.60
SmLINC03658-IBu 0 3.74 4.41 6.00 8.36
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC04896-IBu 0 -1.86 -3.75 1.58 4.07
SmLINC05404-IBu 0 -1.83 -1.83 1.64 4.45
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC05684-IBu 0 0.98 2.20 5.42 8.30
SmLINC06239-IBu 0 -0.42 0.14 2.33 5.24
Smp_063520.1 0 3.75 2.97 5.08 8.02

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_063520.1 SmLINC00004-IBu 0.81 1.00e-04 2.20e-03
Smp_063520.1 SmLINC02029-IBu 0.85 5.39e-05 9.00e-04
Smp_063520.1 SmLINC02376-IBu 0.86 3.86e-05 7.00e-04
Smp_063520.1 SmLINC02786-IBu 0.82 1.00e-04 1.80e-03
Smp_063520.1 SmLINC03658-IBu 0.83 1.00e-04 1.40e-03
Smp_063520.1 SmLINC04235-IBu 0.93 2.55e-07 1.96e-05
Smp_063520.1 SmLINC04423-IBu 0.83 9.80e-05 1.30e-03
Smp_063520.1 SmLINC04896-IBu 0.89 5.04e-06 1.00e-04
Smp_063520.1 SmLINC05404-IBu 0.91 1.46e-06 6.73e-05
Smp_063520.1 SmLINC05604-IBu 0.80 2.00e-04 2.80e-03
Smp_063520.1 SmLINC05684-IBu 0.84 7.91e-05 1.10e-03
Smp_063520.1 SmLINC06239-IBu 0.97 1.25e-09 5.46e-07
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_000390.1 0 1.88 0.00 5.14 11.86
Smp_063520.1 0 3.75 2.97 5.08 8.02
Smp_130970.1 0 4.67 2.67 4.97 10.18
Smp_137460.1 0 4.80 0.00 4.12 10.48
Smp_138360.1 0 -0.10 -4.27 4.84 10.60
Smp_152150.1 0 0.00 0.00 8.69 15.96
Smp_164400.1 0 1.88 2.19 6.73 12.73
Smp_170840.1 0 3.57 0.00 5.93 11.86

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_000390.1 Smp_063520.1 0.90 2.54e-06 1.00e-04
Smp_130970.1 Smp_063520.1 0.95 1.63e-08 3.16e-06
Smp_137460.1 Smp_063520.1 0.94 1.90e-07 1.68e-05
Smp_138360.1 Smp_063520.1 0.91 1.35e-06 6.62e-05
Smp_152150.1 Smp_063520.1 0.94 1.21e-07 1.23e-05
Smp_164400.1 Smp_063520.1 0.92 9.37e-07 5.09e-05
Smp_170840.1 Smp_063520.1 0.90 4.45e-06 1.00e-04