Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_063110.2 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC01733-IBu 0 0.89 2.09 5.78 5.68
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC04432-IBu 0 0.66 2.72 5.35 5.03
Smp_063110.2 0 9.59 11.12 12.37 12.70

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_063110.2 SmLINC01733-IBu 0.80 3.00e-04 3.30e-03
Smp_063110.2 SmLINC02630-IBu -0.80 2.00e-04 3.00e-03
Smp_063110.2 SmLINC04432-IBu 0.82 1.00e-04 2.00e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC05423-IBu 0 1.88 6.67 8.39 8.61
Smp_063110.2 0 9.59 11.12 12.37 12.70

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_063110.2 SmLINC05423-IBu 0.9 4.30e-06 1.00e-04