Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_063060.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC03769-IBu 0 -1.05 -2.94 -6.89 -9.10
SmLINC03930-IBu 0 -0.18 -2.11 -8.92 -4.64
SmLINC05632-IBu 0 4.56 6.06 7.28 6.53
SmLINC05989-IBu 0 -1.59 -3.64 -6.05 -6.59
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
SmLINC06903-IBu 0 -1.36 -4.25 -5.91 -3.41
Smp_063060.1 0 4.43 5.74 6.88 7.39

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_063060.1 SmLINC02255-IBu -0.84 6.15e-05 9.00e-04
Smp_063060.1 SmLINC02630-IBu -0.86 3.37e-05 6.00e-04
Smp_063060.1 SmLINC02657-IBu -0.81 2.00e-04 2.30e-03
Smp_063060.1 SmLINC03769-IBu -0.80 2.00e-04 2.70e-03
Smp_063060.1 SmLINC03930-IBu -0.80 3.00e-04 3.20e-03
Smp_063060.1 SmLINC05632-IBu 0.81 2.00e-04 2.70e-03
Smp_063060.1 SmLINC05989-IBu -0.81 2.00e-04 2.30e-03
Smp_063060.1 SmLINC06128-IBu -0.89 7.77e-06 2.00e-04
Smp_063060.1 SmLINC06535-IBu -0.84 8.39e-05 1.20e-03
Smp_063060.1 SmLINC06903-IBu -0.81 2.00e-04 2.50e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_063060.1 0 4.43 5.74 6.88 7.39
Smp_109240.1 0 -1.29 -3.52 -6.30 -10.11
Smp_172510.2 0 9.12 10.77 11.45 12.33

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_063060.1 Smp_109240.1 -0.91 2.45e-06 1.00e-04
Smp_063060.1 Smp_172510.2 0.93 2.29e-07 1.91e-05