Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_062720.2 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC04957-IBu 0 -2.62 -5.90 -3.92 -7.44
SmLINC06890-IBu 0 -2.18 -6.70 -7.95 -9.08
SmLINC06903-IBu 0 -1.36 -4.25 -5.91 -3.41
Smp_062720.2 0 -4.51 -3.77 -3.48 -4.71

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_062720.2 SmLINC04957-IBu 0.85 5.09e-05 8.00e-04
Smp_062720.2 SmLINC06890-IBu 0.94 1.53e-07 1.37e-05
Smp_062720.2 SmLINC06903-IBu 0.82 1.00e-04 1.70e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_007270.2 0 -4.80 -3.78 -12.58 -12.58
Smp_043670.2 0 -2.66 -2.86 -6.28 -13.62
Smp_062720.2 0 -4.51 -3.77 -3.48 -4.71
Smp_079970.1 0 -3.36 -6.77 -9.16 -12.28
Smp_096020.1 0 -1.77 -8.42 -9.21 -10.05
Smp_182890.1 0 -1.33 -1.67 -9.07 -10.72
Smp_186130.1 0 -2.11 -1.47 -10.40 -10.85

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_062720.2 Smp_007270.2 0.92 6.46e-07 3.92e-05
Smp_043670.2 Smp_062720.2 0.97 1.13e-09 5.52e-07
Smp_079970.1 Smp_062720.2 0.90 4.01e-06 1.00e-04
Smp_096020.1 Smp_062720.2 0.90 3.12e-06 1.00e-04
Smp_182890.1 Smp_062720.2 0.93 2.18e-07 1.85e-05
Smp_062720.2 Smp_186130.1 0.92 1.11e-06 5.77e-05