Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_062610.2 Data


Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC03485-IBu 0 -0.93 -1.24 -9.54 -9.54
SmLINC03486-IBu 0 0.84 -0.08 -7.36 -7.36
Smp_062610.2 0 -1.05 -0.32 -6.81 -10.38

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_062610.2 SmLINC03485-IBu 0.65 7.50e-03 2.81e-02
Smp_062610.2 SmLINC03486-IBu 0.53 3.90e-02 9.30e-02
Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00372-IBu 0 1.42 3.02 -1.83 -2.95
SmLINC01316-IBu 0 -0.35 0.57 -11.60 -4.95
SmLINC02646-IBu 0 0.70 0.79 -6.84 -2.55
SmLINC06646-IBu 0 1.59 1.70 -7.49 -7.49
SmLINC06700-IBu 0 2.95 4.73 1.69 -0.46
SmLINC06836-IBu 0 5.91 8.23 0.00 0.00
Smp_062610.2 0 -1.05 -0.32 -6.81 -10.38

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_062610.2 SmLINC00372-IBu 0.87 1.51e-05 3.00e-04
Smp_062610.2 SmLINC01316-IBu 0.90 3.25e-06 1.00e-04
Smp_062610.2 SmLINC02646-IBu 0.92 6.76e-07 3.89e-05
Smp_062610.2 SmLINC06646-IBu 0.92 5.57e-07 3.39e-05
Smp_062610.2 SmLINC06700-IBu 0.90 2.54e-06 9.96e-05
Smp_062610.2 SmLINC06836-IBu 0.86 2.72e-05 5.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00513-IBu 0 6.74 8.35 0.00 3.11
SmLINC00781-IBu 0 6.19 6.44 3.58 2.95
SmLINC01316-IBu 0 -0.35 0.57 -11.60 -4.95
SmLINC02626-IBu 0 8.15 9.29 3.73 6.59
SmLINC02646-IBu 0 0.70 0.79 -6.84 -2.55
SmLINC03132-IBu 0 3.76 4.91 1.54 -0.47
SmLINC03953-IBu 0 1.67 3.25 -2.76 -1.08
SmLINC04007-IBu 0 -1.63 0.45 -8.95 -8.95
SmLINC05348-IBu 0 -0.21 0.48 -2.93 -5.35
SmLINC06048-IBu 0 0.79 1.93 -4.19 -7.12
SmLINC06646-IBu 0 1.59 1.70 -7.49 -7.49
SmLINC06700-IBu 0 2.95 4.73 1.69 -0.46
SmLINC07012-IBu 0 4.23 5.09 -1.27 -4.32
SmLINC07014-IBu 0 0.31 0.27 -11.64 -11.64
Smp_011660.3 0 3.68 4.23 1.47 0.71
Smp_017650.1 0 9.51 10.68 -7.98 0.00
Smp_021340.3 0 9.76 11.05 9.34 9.26
Smp_022320.1 0 0.31 -0.15 -2.49 -6.20
Smp_024820.1 0 4.10 4.75 1.46 1.82
Smp_027990.1 0 1.00 2.03 -4.13 -5.46
Smp_029240.1 0 3.97 4.74 2.59 1.22
Smp_031770.3 0 0.52 1.55 -9.48 -9.48
Smp_032120.1 0 0.03 1.02 -10.65 -10.65
Smp_032320.2 0 -0.17 0.68 -9.42 -9.42
Smp_032740.1 0 2.87 3.50 0.35 -1.77
Smp_032750.1 0 0.69 0.55 -6.01 -6.60
Smp_034840.1 0 12.23 13.88 0.00 0.00
Smp_035200.2 0 2.64 4.29 0.34 1.53
Smp_036270.3 0 1.18 2.21 -10.17 -10.17
Smp_049600.3 0 1.80 2.94 -9.17 -1.90
Smp_052290.1 0 1.68 2.86 -1.36 -2.94
Smp_059340.3 0 0.76 1.23 -11.82 -11.82
Smp_062610.2 0 -1.05 -0.32 -6.81 -10.38
Smp_063650.3 0 8.82 10.72 0.00 0.00
Smp_079260.1 0 1.54 2.23 -2.79 -3.15
Smp_083380.2 0 9.13 10.31 0.00 0.00
Smp_084940.2 0 10.34 11.98 9.66 9.92
Smp_098370.1 0 9.63 11.25 6.43 9.48
Smp_099160.4 0 11.96 13.30 11.03 12.32
Smp_099560.1 0 8.15 8.89 -2.27 -2.27
Smp_103540.1 0 11.43 12.63 8.84 9.65
Smp_103930.1 0 0.87 2.20 -7.48 0.71
Smp_123870.1 0 -0.64 -0.72 -4.74 -5.09
Smp_126560.1 0 1.05 1.45 -4.09 -4.98
Smp_136120.1 0 5.65 6.93 4.13 3.70
Smp_138140.1 0 2.02 2.69 -3.31 -2.76
Smp_140130.1 0 1.66 2.18 -1.05 -2.58
Smp_143180.1 0 1.31 2.18 -4.27 -1.25
Smp_146920.1 0 0.99 1.37 -7.20 -7.20
Smp_149870.1 0 0.08 0.15 -3.14 -8.77
Smp_152170.1 0 2.88 3.15 -0.68 -0.83
Smp_155170.1 0 2.84 3.14 -1.92 0.05
Smp_157270.1 0 3.45 4.02 -0.36 -1.80
Smp_157280.1 0 4.32 5.40 2.85 1.60
Smp_157840.1 0 1.84 2.05 -4.37 -2.80
Smp_159380.1 0 0.56 1.21 -4.02 -3.82
Smp_168800.1 0 0.13 -0.51 -10.46 -10.46
Smp_169500.1 0 1.36 1.90 -2.93 -5.45
Smp_174750.1 0 1.35 2.65 -1.87 -1.39
Smp_180630.1 0 0.12 1.09 -6.32 -9.26
Smp_189180.2 0 -0.25 -0.54 -4.07 -4.89
Smp_190370.1 0 1.12 2.62 -1.76 -2.23
Smp_190900.1 0 0.50 -0.24 -3.60 -3.79
Smp_196410.1 0 0.98 1.80 -3.57 -2.94
Smp_197150.1 0 -0.08 0.36 -3.43 -4.33

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_062610.2 SmLINC00513-IBu 0.90 3.93e-06 1.00e-04
Smp_062610.2 SmLINC00781-IBu 0.92 9.47e-07 5.13e-05
Smp_062610.2 SmLINC01316-IBu 0.90 3.25e-06 1.00e-04
Smp_062610.2 SmLINC02626-IBu 0.93 2.29e-07 1.91e-05
Smp_062610.2 SmLINC02646-IBu 0.92 6.76e-07 4.05e-05
Smp_062610.2 SmLINC03132-IBu 0.94 1.90e-07 1.68e-05
Smp_062610.2 SmLINC03953-IBu 0.91 2.07e-06 8.93e-05
Smp_062610.2 SmLINC04007-IBu 0.90 2.87e-06 1.00e-04
Smp_062610.2 SmLINC05348-IBu 0.93 3.80e-07 2.71e-05
Smp_062610.2 SmLINC06048-IBu 0.95 1.92e-08 3.54e-06
Smp_062610.2 SmLINC06646-IBu 0.92 5.57e-07 3.54e-05
Smp_062610.2 SmLINC06700-IBu 0.90 2.54e-06 1.00e-04
Smp_062610.2 SmLINC07012-IBu 0.94 1.83e-07 1.63e-05
Smp_062610.2 SmLINC07014-IBu 0.91 1.71e-06 7.82e-05
Smp_062610.2 Smp_011660.3 0.90 3.63e-06 1.00e-04
Smp_062610.2 Smp_017650.1 0.96 1.04e-08 2.35e-06
Smp_062610.2 Smp_021340.3 0.92 1.15e-06 5.91e-05
Smp_062610.2 Smp_022320.1 0.91 2.36e-06 9.79e-05
Smp_062610.2 Smp_024820.1 0.94 8.99e-08 1.00e-05
Smp_062610.2 Smp_027990.1 0.93 2.93e-07 2.27e-05
Smp_062610.2 Smp_029240.1 0.91 2.22e-06 9.37e-05
Smp_062610.2 Smp_031770.3 0.92 5.59e-07 3.55e-05
Smp_062610.2 Smp_032120.1 0.91 2.09e-06 8.98e-05
Smp_062610.2 Smp_032320.2 0.96 5.24e-09 1.49e-06
Smp_062610.2 Smp_032740.1 0.90 3.59e-06 1.00e-04
Smp_062610.2 Smp_032750.1 0.94 1.91e-07 1.69e-05
Smp_062610.2 Smp_034840.1 0.92 5.51e-07 3.51e-05
Smp_062610.2 Smp_035200.2 0.90 3.72e-06 1.00e-04
Smp_062610.2 Smp_036270.3 0.94 1.88e-07 1.67e-05
Smp_062610.2 Smp_049600.3 0.93 3.63e-07 2.63e-05
Smp_062610.2 Smp_052290.1 0.91 1.96e-06 8.58e-05
Smp_062610.2 Smp_059340.3 0.95 2.59e-08 4.32e-06
Smp_062610.2 Smp_063650.3 0.91 1.53e-06 7.21e-05
Smp_062610.2 Smp_079260.1 0.94 9.41e-08 1.03e-05
Smp_062610.2 Smp_083380.2 0.93 3.15e-07 2.38e-05
Smp_062610.2 Smp_084940.2 0.90 3.83e-06 1.00e-04
Smp_062610.2 Smp_098370.1 0.91 2.38e-06 9.83e-05
Smp_062610.2 Smp_099160.4 0.91 1.50e-06 7.10e-05
Smp_062610.2 Smp_099560.1 0.92 6.79e-07 4.06e-05
Smp_062610.2 Smp_103540.1 0.90 2.63e-06 1.00e-04
Smp_062610.2 Smp_103930.1 0.93 2.34e-07 1.94e-05
Smp_062610.2 Smp_123870.1 0.91 1.63e-06 7.54e-05
Smp_062610.2 Smp_126560.1 0.93 3.52e-07 2.57e-05
Smp_062610.2 Smp_136120.1 0.92 1.11e-06 5.77e-05
Smp_062610.2 Smp_138140.1 0.93 4.79e-07 3.18e-05
Smp_062610.2 Smp_140130.1 0.93 3.30e-07 2.46e-05
Smp_062610.2 Smp_143180.1 0.95 3.33e-08 5.13e-06
Smp_062610.2 Smp_146920.1 0.95 2.77e-08 4.53e-06
Smp_062610.2 Smp_149870.1 0.93 3.08e-07 2.35e-05
Smp_062610.2 Smp_152170.1 0.93 4.96e-07 3.27e-05
Smp_062610.2 Smp_155170.1 0.91 2.31e-06 9.64e-05
Smp_062610.2 Smp_157270.1 0.90 2.64e-06 1.00e-04
Smp_062610.2 Smp_157280.1 0.92 9.70e-07 5.22e-05
Smp_062610.2 Smp_157840.1 0.92 7.80e-07 4.48e-05
Smp_062610.2 Smp_159380.1 0.90 4.48e-06 1.00e-04
Smp_062610.2 Smp_168800.1 0.90 2.94e-06 1.00e-04
Smp_062610.2 Smp_169500.1 0.92 5.22e-07 3.38e-05
Smp_062610.2 Smp_174750.1 0.94 1.71e-07 1.56e-05
Smp_062610.2 Smp_180630.1 0.97 2.19e-09 8.46e-07
Smp_062610.2 Smp_189180.2 0.93 2.14e-07 1.82e-05
Smp_062610.2 Smp_190370.1 0.90 4.32e-06 1.00e-04
Smp_062610.2 Smp_190900.1 0.92 5.95e-07 3.71e-05
Smp_062610.2 Smp_196410.1 0.94 6.53e-08 8.09e-06
Smp_062610.2 Smp_197150.1 0.93 4.25e-07 2.93e-05