Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_062420.4 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC04430-IBu 0 1.35 4.06 1.40 0.01
SmLINC05559-IBu 0 -0.72 2.59 -1.58 -1.98
SmLINC06700-IBu 0 2.95 4.73 1.69 -0.46
Smp_062420.4 0 -0.89 2.10 -11.39 -11.39

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_062420.4 SmLINC04430-IBu 0.87 1.90e-05 4.00e-04
Smp_062420.4 SmLINC05559-IBu 0.82 1.00e-04 2.00e-03
Smp_062420.4 SmLINC06700-IBu 0.86 2.89e-05 5.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00192-IBu 0 0.61 2.35 -8.28 -4.07
SmLINC01824-IBu 0 0.00 5.41 4.53 2.63
SmLINC04077-IBu 0 1.23 3.96 -1.93 -1.93
SmLINC06818-IBu 0 -0.47 6.07 -3.17 -3.17
SmLINC07017-IBu 0 2.51 4.73 -1.06 -1.03
Smp_008910.1 0 -1.29 0.24 -6.54 -6.54
Smp_017020.1 0 0.08 0.95 -6.58 -6.58
Smp_042090.3 0 0.00 11.29 0.00 0.00
Smp_062420.1 0 1.52 4.05 -0.25 -0.83
Smp_062420.4 0 -0.89 2.10 -11.39 -11.39
Smp_073500.1 0 -3.17 0.56 -2.72 -8.53
Smp_078010.1 0 -2.61 3.58 -0.01 -6.74
Smp_084940.1 0 -2.11 1.80 -3.80 -4.78
Smp_085110.3 0 8.59 12.67 0.00 0.00
Smp_103830.1 0 0.33 7.02 0.00 0.00
Smp_179270.2 0 8.48 9.70 4.70 3.75
Smp_180640.1 0 -1.02 0.50 -3.82 -5.77
Smp_189380.1 0 1.72 6.15 2.10 5.31
Smp_202120.1 0 -0.66 7.33 6.40 5.50
Smp_206270.1 0 1.06 4.27 1.21 -0.69

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_062420.4 SmLINC00192-IBu 0.90 4.39e-06 1.00e-04
Smp_062420.4 SmLINC01824-IBu 0.91 1.44e-06 6.91e-05
Smp_062420.4 SmLINC04077-IBu 0.94 6.22e-08 7.83e-06
Smp_062420.4 SmLINC06818-IBu 0.95 3.25e-08 5.05e-06
Smp_062420.4 SmLINC07017-IBu 0.97 2.94e-10 2.33e-07
Smp_008910.1 Smp_062420.4 0.90 4.37e-06 1.00e-04
Smp_017020.1 Smp_062420.4 0.90 3.63e-06 1.00e-04
Smp_042090.3 Smp_062420.4 0.92 5.30e-07 3.42e-05
Smp_062420.1 Smp_062420.4 0.97 5.09e-10 3.30e-07
Smp_073500.1 Smp_062420.4 0.94 1.41e-07 1.37e-05
Smp_078010.1 Smp_062420.4 0.92 7.58e-07 4.39e-05
Smp_084940.1 Smp_062420.4 0.92 5.49e-07 3.50e-05
Smp_085110.3 Smp_062420.4 0.97 3.02e-10 2.37e-07
Smp_103830.1 Smp_062420.4 0.97 2.27e-09 8.65e-07
Smp_179270.2 Smp_062420.4 0.90 3.70e-06 1.00e-04
Smp_062420.4 Smp_180640.1 0.91 2.20e-06 9.31e-05
Smp_189380.1 Smp_062420.4 0.94 9.25e-08 1.02e-05
Smp_202120.1 Smp_062420.4 0.91 1.78e-06 8.01e-05
Smp_206270.1 Smp_062420.4 0.91 2.37e-06 9.83e-05