Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_062420.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00372-IBu 0 1.42 3.02 -1.83 -2.95
SmLINC04430-IBu 0 1.35 4.06 1.40 0.01
SmLINC05559-IBu 0 -0.72 2.59 -1.58 -1.98
SmLINC06700-IBu 0 2.95 4.73 1.69 -0.46
SmLINC06836-IBu 0 5.91 8.23 0.00 0.00
Smp_062420.1 0 1.52 4.05 -0.25 -0.83

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_062420.1 SmLINC00372-IBu 0.85 5.24e-05 8.00e-04
Smp_062420.1 SmLINC04430-IBu 0.93 2.39e-07 1.87e-05
Smp_062420.1 SmLINC05559-IBu 0.89 7.99e-06 2.00e-04
Smp_062420.1 SmLINC06700-IBu 0.94 1.58e-07 1.41e-05
Smp_062420.1 SmLINC06836-IBu 0.88 9.42e-06 2.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_010140.2 0 7.72 10.83 -3.68 -3.68
Smp_042090.3 0 0.00 11.29 0.00 0.00
Smp_062420.1 0 1.52 4.05 -0.25 -0.83
Smp_062420.4 0 -0.89 2.10 -11.39 -11.39
Smp_063650.3 0 8.82 10.72 0.00 0.00
Smp_085110.3 0 8.59 12.67 0.00 0.00

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_010140.2 Smp_062420.1 0.93 3.63e-07 2.63e-05
Smp_042090.3 Smp_062420.1 0.94 1.72e-07 1.57e-05
Smp_062420.1 Smp_062420.4 0.97 5.09e-10 3.30e-07
Smp_063650.3 Smp_062420.1 0.94 1.13e-07 1.17e-05
Smp_085110.3 Smp_062420.1 0.97 6.48e-10 3.85e-07