Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_062070.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00372-IBu 0 1.42 3.02 -1.83 -2.95
SmLINC01316-IBu 0 -0.35 0.57 -11.60 -4.95
SmLINC04430-IBu 0 1.35 4.06 1.40 0.01
SmLINC04947-IBu 0 -5.01 1.51 -1.96 -5.01
SmLINC05559-IBu 0 -0.72 2.59 -1.58 -1.98
SmLINC06646-IBu 0 1.59 1.70 -7.49 -7.49
SmLINC06700-IBu 0 2.95 4.73 1.69 -0.46
SmLINC06836-IBu 0 5.91 8.23 0.00 0.00
Smp_062070.1 0 9.47 10.97 6.18 8.79

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_062070.1 SmLINC00372-IBu 0.96 3.15e-09 9.95e-07
Smp_062070.1 SmLINC01316-IBu 0.84 6.04e-05 9.00e-04
Smp_062070.1 SmLINC04430-IBu 0.85 4.63e-05 8.00e-04
Smp_062070.1 SmLINC04947-IBu 0.81 1.00e-04 2.20e-03
Smp_062070.1 SmLINC05559-IBu 0.91 2.50e-06 9.85e-05
Smp_062070.1 SmLINC06646-IBu 0.83 9.39e-05 1.30e-03
Smp_062070.1 SmLINC06700-IBu 0.89 7.45e-06 2.00e-04
Smp_062070.1 SmLINC06836-IBu 0.95 3.36e-08 4.87e-06
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00372-IBu 0 1.42 3.02 -1.83 -2.95
SmLINC00513-IBu 0 6.74 8.35 0.00 3.11
SmLINC00781-IBu 0 6.19 6.44 3.58 2.95
SmLINC01002-IBu 0 3.82 5.68 -2.26 -2.26
SmLINC01077-IBu 0 2.08 4.52 -1.46 -0.43
SmLINC02626-IBu 0 8.15 9.29 3.73 6.59
SmLINC02970-IBu 0 2.59 3.54 0.54 -1.36
SmLINC02974-IBu 0 4.39 7.22 4.18 3.33
SmLINC03132-IBu 0 3.76 4.91 1.54 -0.47
SmLINC03227-IBu 0 -1.25 0.94 -11.22 -11.22
SmLINC03739-IBu 0 0.68 2.57 -1.44 -2.85
SmLINC03953-IBu 0 1.67 3.25 -2.76 -1.08
SmLINC04065-IBu 0 1.68 2.43 -5.86 -2.73
SmLINC04215-IBu 0 6.59 8.42 5.71 3.29
SmLINC05559-IBu 0 -0.72 2.59 -1.58 -1.98
SmLINC05660-IBu 0 5.07 6.19 0.00 6.57
SmLINC06035-IBu 0 2.66 3.30 -3.07 -0.36
SmLINC06048-IBu 0 0.79 1.93 -4.19 -7.12
SmLINC06180-IBu 0 1.21 3.01 -2.19 -1.74
SmLINC06241-IBu 0 2.77 5.19 0.64 -7.79
SmLINC06836-IBu 0 5.91 8.23 0.00 0.00
SmLINC06953-IBu 0 -0.76 1.41 -2.13 -3.45
Smp_011270.3 0 -0.96 1.19 -5.18 -3.39
Smp_014660.1 0 1.27 2.34 -5.37 -7.50
Smp_017650.1 0 9.51 10.68 -7.98 0.00
Smp_018800.1 0 3.14 4.22 -2.08 -1.80
Smp_019260.2 0 0.65 2.01 -0.64 -4.31
Smp_019940.5 0 1.01 3.12 -6.73 1.95
Smp_021340.3 0 9.76 11.05 9.34 9.26
Smp_024820.1 0 4.10 4.75 1.46 1.82
Smp_027990.1 0 1.00 2.03 -4.13 -5.46
Smp_029940.1 0 0.49 2.88 -3.66 -1.65
Smp_031770.3 0 0.52 1.55 -9.48 -9.48
Smp_032120.1 0 0.03 1.02 -10.65 -10.65
Smp_032320.2 0 -0.17 0.68 -9.42 -9.42
Smp_033670.2 0 1.59 2.15 -4.87 -4.87
Smp_034840.1 0 12.23 13.88 0.00 0.00
Smp_036270.3 0 1.18 2.21 -10.17 -10.17
Smp_049600.3 0 1.80 2.94 -9.17 -1.90
Smp_052290.1 0 1.68 2.86 -1.36 -2.94
Smp_059340.3 0 0.76 1.23 -11.82 -11.82
Smp_059530.1 0 2.86 3.32 -11.10 -11.10
Smp_060190.4 0 -0.15 1.63 -8.76 -8.76
Smp_062070.1 0 9.47 10.97 6.18 8.79
Smp_075290.4 0 0.20 2.62 -2.13 -0.42
Smp_076040.2 0 -0.64 1.55 -9.83 -9.83
Smp_079260.1 0 1.54 2.23 -2.79 -3.15
Smp_083380.2 0 9.13 10.31 0.00 0.00
Smp_084940.2 0 10.34 11.98 9.66 9.92
Smp_098370.1 0 9.63 11.25 6.43 9.48
Smp_099160.4 0 11.96 13.30 11.03 12.32
Smp_099560.1 0 8.15 8.89 -2.27 -2.27
Smp_103540.1 0 11.43 12.63 8.84 9.65
Smp_103930.1 0 0.87 2.20 -7.48 0.71
Smp_105710.2 0 7.84 8.99 0.00 0.00
Smp_112520.1 0 1.59 3.68 -6.44 -6.44
Smp_112930.1 0 1.35 2.48 -6.71 -8.42
Smp_115510.1 0 0.70 2.56 -0.33 -4.70
Smp_123920.1 0 2.53 6.35 1.54 1.49
Smp_132470.1 0 0.90 3.28 -5.62 -9.01
Smp_135010.1 0 0.82 3.18 -0.95 -2.30
Smp_136120.1 0 5.65 6.93 4.13 3.70
Smp_136720.1 0 1.63 4.13 -5.84 -3.55
Smp_139170.1 0 2.45 4.33 0.78 0.06
Smp_139940.1 0 3.07 4.50 -0.39 -2.02
Smp_143180.1 0 1.31 2.18 -4.27 -1.25
Smp_144120.1 0 1.28 2.86 -1.28 -2.28
Smp_144350.1 0 2.33 4.53 0.32 -0.03
Smp_145950.1 0 1.16 2.62 -4.07 -0.95
Smp_148110.1 0 1.60 3.38 -2.98 -3.24
Smp_149870.1 0 0.08 0.15 -3.14 -8.77
Smp_152540.1 0 3.53 6.32 3.87 4.18
Smp_153210.1 0 3.24 5.11 0.30 -0.00
Smp_153650.1 0 -0.02 1.72 -2.93 -3.55
Smp_155250.1 0 4.57 5.88 4.24 2.03
Smp_155690.1 0 0.49 1.13 -3.13 -4.07
Smp_157270.1 0 3.45 4.02 -0.36 -1.80
Smp_157280.1 0 4.32 5.40 2.85 1.60
Smp_159070.3 0 -0.25 1.24 -10.95 -4.48
Smp_159070.4 0 3.29 5.54 2.90 0.83
Smp_159150.1 0 12.28 13.98 12.38 11.81
Smp_160670.1 0 1.07 2.08 -4.35 -3.20
Smp_161270.1 0 1.27 1.64 -8.43 -8.43
Smp_163550.1 0 1.70 4.66 1.90 0.50
Smp_169500.1 0 1.36 1.90 -2.93 -5.45
Smp_171420.1 0 2.93 4.14 1.74 -0.67
Smp_174170.1 0 2.27 3.86 1.11 -0.90
Smp_174750.1 0 1.35 2.65 -1.87 -1.39
Smp_175290.1 0 2.94 5.17 0.92 0.51
Smp_175300.1 0 6.82 9.29 5.85 5.56
Smp_179740.1 0 1.00 3.85 0.39 0.86
Smp_180050.1 0 1.06 0.86 -2.29 -5.29
Smp_180630.1 0 0.12 1.09 -6.32 -9.26
Smp_184370.1 0 -1.11 0.66 -3.32 -4.28
Smp_188230.1 0 2.60 5.01 2.53 1.16
Smp_190370.1 0 1.12 2.62 -1.76 -2.23
Smp_194670.1 0 1.55 1.93 -1.67 -3.11
Smp_196410.1 0 0.98 1.80 -3.57 -2.94
Smp_212600.1 0 2.41 4.90 2.41 2.00

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_062070.1 SmLINC00372-IBu 0.96 3.15e-09 1.06e-06
Smp_062070.1 SmLINC00513-IBu 0.96 6.74e-09 1.75e-06
Smp_062070.1 SmLINC00781-IBu 0.92 9.44e-07 5.12e-05
Smp_062070.1 SmLINC01002-IBu 0.91 2.42e-06 9.96e-05
Smp_062070.1 SmLINC01077-IBu 0.94 8.17e-08 9.42e-06
Smp_062070.1 SmLINC02626-IBu 0.92 6.67e-07 4.01e-05
Smp_062070.1 SmLINC02970-IBu 0.96 4.40e-09 1.33e-06
Smp_062070.1 SmLINC02974-IBu 0.93 2.95e-07 2.28e-05
Smp_062070.1 SmLINC03132-IBu 0.96 7.14e-09 1.82e-06
Smp_062070.1 SmLINC03227-IBu 0.90 4.57e-06 1.00e-04
Smp_062070.1 SmLINC03739-IBu 0.92 7.72e-07 4.44e-05
Smp_062070.1 SmLINC03953-IBu 0.96 7.59e-09 1.90e-06
Smp_062070.1 SmLINC04065-IBu 0.90 3.94e-06 1.00e-04
Smp_062070.1 SmLINC04215-IBu 0.94 1.07e-07 1.13e-05
Smp_062070.1 SmLINC05559-IBu 0.91 2.50e-06 1.00e-04
Smp_062070.1 SmLINC05660-IBu 0.90 3.46e-06 1.00e-04
Smp_062070.1 SmLINC06035-IBu 0.90 3.01e-06 1.00e-04
Smp_062070.1 SmLINC06048-IBu 0.95 1.48e-08 2.97e-06
Smp_062070.1 SmLINC06180-IBu 0.91 1.39e-06 6.75e-05
Smp_062070.1 SmLINC06241-IBu 0.93 4.74e-07 3.16e-05
Smp_062070.1 SmLINC06836-IBu 0.95 3.36e-08 5.16e-06
Smp_062070.1 SmLINC06953-IBu 0.90 3.52e-06 1.00e-04
Smp_011270.3 Smp_062070.1 0.92 1.08e-06 5.66e-05
Smp_014660.1 Smp_062070.1 0.95 2.21e-08 3.89e-06
Smp_062070.1 Smp_017650.1 0.93 3.33e-07 2.47e-05
Smp_062070.1 Smp_018800.1 0.96 2.40e-09 8.96e-07
Smp_019260.2 Smp_062070.1 0.95 3.56e-08 5.37e-06
Smp_019940.5 Smp_062070.1 0.92 8.63e-07 4.81e-05
Smp_062070.1 Smp_021340.3 0.93 4.80e-07 3.19e-05
Smp_024820.1 Smp_062070.1 0.91 1.38e-06 6.70e-05
Smp_027990.1 Smp_062070.1 0.95 4.41e-08 6.20e-06
Smp_029940.1 Smp_062070.1 0.95 1.62e-08 3.16e-06
Smp_031770.3 Smp_062070.1 0.93 2.96e-07 2.28e-05
Smp_062070.1 Smp_032120.1 0.96 7.98e-09 1.96e-06
Smp_032320.2 Smp_062070.1 0.91 2.12e-06 9.06e-05
Smp_033670.2 Smp_062070.1 0.90 2.95e-06 1.00e-04
Smp_034840.1 Smp_062070.1 0.94 1.40e-07 1.36e-05
Smp_062070.1 Smp_036270.3 0.94 1.49e-07 1.42e-05
Smp_049600.3 Smp_062070.1 0.95 2.67e-08 4.41e-06
Smp_052290.1 Smp_062070.1 0.97 1.75e-09 7.30e-07
Smp_062070.1 Smp_059340.3 0.92 8.42e-07 4.73e-05
Smp_059530.1 Smp_062070.1 0.92 5.62e-07 3.56e-05
Smp_060190.4 Smp_062070.1 0.92 5.28e-07 3.41e-05
Smp_075290.4 Smp_062070.1 0.95 5.73e-08 7.41e-06
Smp_076040.2 Smp_062070.1 0.93 3.68e-07 2.65e-05
Smp_079260.1 Smp_062070.1 0.94 1.54e-07 1.46e-05
Smp_062070.1 Smp_083380.2 0.93 5.12e-07 3.34e-05
Smp_062070.1 Smp_084940.2 0.97 1.14e-09 5.54e-07
Smp_098370.1 Smp_062070.1 0.96 3.60e-09 1.16e-06
Smp_099160.4 Smp_062070.1 0.91 1.93e-06 8.50e-05
Smp_099560.1 Smp_062070.1 0.93 3.30e-07 2.46e-05
Smp_103540.1 Smp_062070.1 0.97 1.99e-10 1.80e-07
Smp_103930.1 Smp_062070.1 0.92 7.76e-07 4.46e-05
Smp_105710.2 Smp_062070.1 0.91 2.46e-06 1.00e-04
Smp_062070.1 Smp_112520.1 0.94 1.67e-07 1.54e-05
Smp_112930.1 Smp_062070.1 0.90 3.42e-06 1.00e-04
Smp_115510.1 Smp_062070.1 0.93 2.40e-07 1.97e-05
Smp_123920.1 Smp_062070.1 0.90 4.06e-06 1.00e-04
Smp_132470.1 Smp_062070.1 0.92 7.29e-07 4.27e-05
Smp_135010.1 Smp_062070.1 0.93 3.84e-07 2.73e-05
Smp_136120.1 Smp_062070.1 0.94 8.72e-08 9.85e-06
Smp_062070.1 Smp_136720.1 0.94 1.86e-07 1.66e-05
Smp_139170.1 Smp_062070.1 0.94 7.91e-08 9.22e-06
Smp_062070.1 Smp_139940.1 0.96 1.24e-08 2.63e-06
Smp_143180.1 Smp_062070.1 0.92 6.96e-07 4.14e-05
Smp_062070.1 Smp_144120.1 0.95 5.74e-08 7.42e-06
Smp_062070.1 Smp_144350.1 0.95 3.08e-08 4.86e-06
Smp_145950.1 Smp_062070.1 0.96 9.28e-09 2.17e-06
Smp_148110.1 Smp_062070.1 0.96 4.91e-09 1.42e-06
Smp_149870.1 Smp_062070.1 0.93 2.56e-07 2.06e-05
Smp_152540.1 Smp_062070.1 0.93 4.32e-07 2.96e-05
Smp_153210.1 Smp_062070.1 0.98 8.69e-11 1.06e-07
Smp_153650.1 Smp_062070.1 0.94 9.97e-08 1.07e-05
Smp_062070.1 Smp_155250.1 0.92 1.07e-06 5.61e-05
Smp_155690.1 Smp_062070.1 0.92 1.16e-06 5.93e-05
Smp_157270.1 Smp_062070.1 0.91 1.20e-06 6.07e-05
Smp_157280.1 Smp_062070.1 0.96 9.74e-09 2.24e-06
Smp_159070.3 Smp_062070.1 0.94 8.55e-08 9.72e-06
Smp_062070.1 Smp_159070.4 0.95 1.63e-08 3.17e-06
Smp_159150.1 Smp_062070.1 0.94 9.63e-08 1.05e-05
Smp_062070.1 Smp_160670.1 0.93 2.12e-07 1.81e-05
Smp_161270.1 Smp_062070.1 0.90 3.57e-06 1.00e-04
Smp_163550.1 Smp_062070.1 0.92 7.73e-07 4.45e-05
Smp_169500.1 Smp_062070.1 0.92 1.14e-06 5.86e-05
Smp_171420.1 Smp_062070.1 0.91 2.09e-06 8.97e-05
Smp_174170.1 Smp_062070.1 0.97 6.72e-10 3.94e-07
Smp_174750.1 Smp_062070.1 0.91 1.24e-06 6.24e-05
Smp_175290.1 Smp_062070.1 0.96 2.84e-09 9.99e-07
Smp_175300.1 Smp_062070.1 0.95 1.56e-08 3.07e-06
Smp_062070.1 Smp_179740.1 0.92 9.39e-07 5.10e-05
Smp_180050.1 Smp_062070.1 0.92 1.17e-06 5.98e-05
Smp_180630.1 Smp_062070.1 0.94 8.78e-08 9.90e-06
Smp_184370.1 Smp_062070.1 0.93 4.39e-07 3.00e-05
Smp_188230.1 Smp_062070.1 0.94 1.11e-07 1.16e-05
Smp_190370.1 Smp_062070.1 0.94 1.14e-07 1.18e-05
Smp_194670.1 Smp_062070.1 0.90 4.16e-06 1.00e-04
Smp_196410.1 Smp_062070.1 0.94 1.84e-07 1.65e-05
Smp_212600.1 Smp_062070.1 0.94 1.20e-07 1.23e-05