Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_061940.2 Data

Correlation between Smp_061940.2 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_061940.2 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC05989-IBu 0 -1.59 -3.64 -6.05 -6.59
SmLINC06890-IBu 0 -2.18 -6.70 -7.95 -9.08
SmLINC06903-IBu 0 -1.36 -4.25 -5.91 -3.41
Smp_061940.2 0 -3.16 -5.22 -11.34 -15.89

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_061940.2 SmLINC05989-IBu 0.87 2.44e-05 5.00e-04
Smp_061940.2 SmLINC06890-IBu 0.92 1.17e-06 5.75e-05
Smp_061940.2 SmLINC06903-IBu 0.88 1.27e-05 3.00e-04

Correlation between Smp_061940.2 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC06491-IBu 0 -2.11 -3.83 -3.48 -3.52
SmLINC06890-IBu 0 -2.18 -6.70 -7.95 -9.08
Smp_005880.1 0 -1.71 -5.17 -4.43 -5.19
Smp_009650.1 0 -2.22 -4.12 -4.36 -3.86
Smp_020550.1 0 -3.71 -4.02 -4.24 -5.10
Smp_055770.1 0 -5.16 -5.96 -12.28 -12.28
Smp_061940.2 0 -3.16 -5.22 -11.34 -15.89
Smp_079970.1 0 -3.36 -6.77 -9.16 -12.28
Smp_099680.1 0 -3.17 -4.14 -4.93 -7.18
Smp_124340.1 0 -2.62 -4.99 -7.42 -3.75
Smp_129610.1 0 -3.45 -4.74 -3.50 -3.64
Smp_140270.1 0 -2.83 -3.04 -4.31 -3.33
Smp_163390.1 0 -8.96 -8.96 -8.96 -8.96
Smp_178630.1 0 -1.78 -5.50 -9.26 -9.26
Smp_182890.1 0 -1.33 -1.67 -9.07 -10.72
Smp_196050.1 0 -3.12 -5.35 -6.02 -6.99

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_061940.2 SmLINC06491-IBu 0.94 1.20e-07 1.22e-05
Smp_061940.2 SmLINC06890-IBu 0.92 1.17e-06 5.97e-05
Smp_005880.1 Smp_061940.2 0.90 4.65e-06 1.00e-04
Smp_061940.2 Smp_009650.1 0.91 2.27e-06 9.51e-05
Smp_020550.1 Smp_061940.2 0.91 2.24e-06 9.42e-05
Smp_055770.1 Smp_061940.2 0.91 1.41e-06 6.82e-05
Smp_079970.1 Smp_061940.2 0.91 1.80e-06 8.08e-05
Smp_061940.2 Smp_099680.1 0.90 3.92e-06 1.00e-04
Smp_124340.1 Smp_061940.2 0.93 3.01e-07 2.31e-05
Smp_129610.1 Smp_061940.2 0.91 1.52e-06 7.18e-05
Smp_140270.1 Smp_061940.2 0.91 2.01e-06 8.75e-05
Smp_163390.1 Smp_061940.2 0.91 2.18e-06 9.24e-05
Smp_178630.1 Smp_061940.2 0.91 1.78e-06 8.02e-05
Smp_182890.1 Smp_061940.2 0.91 1.24e-06 6.23e-05
Smp_196050.1 Smp_061940.2 0.91 1.36e-06 6.65e-05