Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_061940.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02039-IBu 0 -3.01 -8.41 -3.05 -3.36
SmLINC02678-IBu 0 -3.18 -2.40 -3.22 -5.56
SmLINC02888-IBu 0 -1.98 -4.28 -4.50 -5.76
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06892-IBu 0 -2.10 -3.44 -12.52 -12.52
Smp_061940.1 0 -2.48 -6.54 -5.15 -5.02

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_061940.1 SmLINC02039-IBu 0.83 9.10e-05 1.30e-03
Smp_061940.1 SmLINC02678-IBu 0.84 6.54e-05 1.00e-03
Smp_061940.1 SmLINC02888-IBu 0.89 6.34e-06 1.00e-04
Smp_061940.1 SmLINC06128-IBu 0.88 1.35e-05 3.00e-04
Smp_061940.1 SmLINC06892-IBu 0.91 1.61e-06 7.20e-05
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_009650.2 0 -7.49 -7.79 -8.95 -11.71
Smp_018880.1 0 -2.71 -8.49 -10.03 -6.16
Smp_032990.1 0 -1.53 -9.49 -13.75 -8.21
Smp_036400.2 0 -2.63 -11.95 -8.03 -7.25
Smp_061940.1 0 -2.48 -6.54 -5.15 -5.02
Smp_065580.1 0 -2.41 -12.61 -6.08 -5.45
Smp_066010.1 0 -2.34 -10.90 -6.48 -4.88
Smp_085290.3 0 -2.11 -9.33 -13.07 -9.78
Smp_102670.1 0 -2.95 -8.79 -12.62 -12.62
Smp_106390.1 0 -2.35 -4.90 -10.78 -6.23
Smp_133770.1 0 -4.18 -7.68 -11.38 -11.45
Smp_145810.2 0 -1.83 -3.47 -4.75 -10.08
Smp_150690.2 0 -2.07 -12.58 -12.58 -12.58
Smp_153240.1 0 -4.59 -8.67 -11.23 -11.04
Smp_169190.1 0 -3.08 -5.99 -19.20 -16.89
Smp_178240.1 0 -3.79 -9.33 -8.87 -11.00
Smp_184460.1 0 -2.24 -5.26 -13.63 -13.63
Smp_185360.1 0 -2.43 -5.85 -12.83 -12.83
Smp_206150.1 0 -1.95 -4.12 -11.47 -11.47

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_061940.1 Smp_009650.2 0.92 6.98e-07 4.14e-05
Smp_061940.1 Smp_018880.1 0.93 2.07e-07 1.78e-05
Smp_061940.1 Smp_032990.1 0.91 2.21e-06 9.35e-05
Smp_036400.2 Smp_061940.1 0.90 2.93e-06 1.00e-04
Smp_061940.1 Smp_065580.1 0.93 3.81e-07 2.72e-05
Smp_061940.1 Smp_066010.1 0.93 4.09e-07 2.85e-05
Smp_061940.1 Smp_085290.3 0.95 2.17e-08 3.84e-06
Smp_102670.1 Smp_061940.1 0.96 4.05e-09 1.26e-06
Smp_106390.1 Smp_061940.1 0.93 2.58e-07 2.07e-05
Smp_061940.1 Smp_133770.1 0.97 1.76e-09 7.33e-07
Smp_061940.1 Smp_145810.2 0.90 4.25e-06 1.00e-04
Smp_150690.2 Smp_061940.1 0.94 1.05e-07 1.11e-05
Smp_061940.1 Smp_153240.1 0.96 8.96e-09 2.12e-06
Smp_061940.1 Smp_169190.1 0.94 8.43e-08 9.63e-06
Smp_061940.1 Smp_178240.1 0.97 6.37e-10 3.81e-07
Smp_061940.1 Smp_184460.1 0.98 1.25e-10 1.34e-07
Smp_061940.1 Smp_185360.1 0.98 5.60e-12 1.92e-08
Smp_206150.1 Smp_061940.1 0.96 7.80e-09 1.93e-06