Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_061580.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06892-IBu 0 -2.10 -3.44 -12.52 -12.52
Smp_061580.1 0 -1.55 -4.87 -3.14 -2.48

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_061580.1 SmLINC06128-IBu 0.86 3.76e-05 6.00e-04
Smp_061580.1 SmLINC06892-IBu 0.87 1.62e-05 3.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_061580.1 0 -1.55 -4.87 -3.14 -2.48
Smp_066010.1 0 -2.34 -10.90 -6.48 -4.88
Smp_067980.1 0 -0.94 -11.67 -4.00 -4.18
Smp_085290.3 0 -2.11 -9.33 -13.07 -9.78
Smp_106390.1 0 -2.35 -4.90 -10.78 -6.23
Smp_140680.2 0 -1.06 -11.75 -8.40 -8.18
Smp_145810.2 0 -1.83 -3.47 -4.75 -10.08
Smp_150690.2 0 -2.07 -12.58 -12.58 -12.58
Smp_168080.2 0 -1.01 -12.06 -12.06 -12.06
Smp_184460.1 0 -2.24 -5.26 -13.63 -13.63
Smp_185360.1 0 -2.43 -5.85 -12.83 -12.83
Smp_188900.1 0 -1.35 -4.02 -11.76 -11.76
Smp_195070.1 0 -1.13 -9.73 -18.26 -16.31
Smp_202140.1 0 -1.27 -3.64 -10.44 -10.44
Smp_206150.1 0 -1.95 -4.12 -11.47 -11.47

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_066010.1 Smp_061580.1 0.91 1.93e-06 8.50e-05
Smp_067980.1 Smp_061580.1 0.94 1.22e-07 1.24e-05
Smp_061580.1 Smp_085290.3 0.97 1.12e-09 5.49e-07
Smp_106390.1 Smp_061580.1 0.92 1.03e-06 5.46e-05
Smp_140680.2 Smp_061580.1 0.94 1.49e-07 1.42e-05
Smp_145810.2 Smp_061580.1 0.94 1.80e-07 1.62e-05
Smp_150690.2 Smp_061580.1 0.94 1.03e-07 1.11e-05
Smp_168080.2 Smp_061580.1 0.92 8.05e-07 4.58e-05
Smp_184460.1 Smp_061580.1 0.93 1.94e-07 1.71e-05
Smp_185360.1 Smp_061580.1 0.94 6.61e-08 8.16e-06
Smp_188900.1 Smp_061580.1 0.94 7.45e-08 8.85e-06
Smp_061580.1 Smp_195070.1 0.92 9.02e-07 4.96e-05
Smp_202140.1 Smp_061580.1 0.94 1.70e-07 1.55e-05
Smp_206150.1 Smp_061580.1 0.93 3.88e-07 2.75e-05