Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_060420.3 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC06892-IBu 0 -2.10 -3.44 -12.52 -12.52
Smp_060420.3 0 -1.56 -2.67 -4.56 -5.71

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_060420.3 SmLINC06892-IBu 0.83 1.00e-04 1.40e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_033000.1 0 -1.72 -11.37 -13.15 -11.62
Smp_060420.3 0 -1.56 -2.67 -4.56 -5.71
Smp_106390.1 0 -2.35 -4.90 -10.78 -6.23
Smp_145810.2 0 -1.83 -3.47 -4.75 -10.08
Smp_165180.1 0 -1.47 -9.43 -12.79 -7.00

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_033000.1 Smp_060420.3 0.96 8.83e-09 2.10e-06
Smp_106390.1 Smp_060420.3 0.90 3.03e-06 1.00e-04
Smp_145810.2 Smp_060420.3 0.91 2.35e-06 9.75e-05
Smp_060420.3 Smp_165180.1 0.95 2.46e-08 4.18e-06