Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_060220.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC00548-IBu 0 1.58 1.11 7.48 7.20
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01122-IBu 0 0.00 0.00 6.36 6.32
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01432-IBu 0 0.44 1.90 4.35 4.98
SmLINC01538-IBu 0 0.00 3.62 10.85 10.43
SmLINC01569-IBu 0 -0.90 -0.28 4.61 4.49
SmLINC01733-IBu 0 0.89 2.09 5.78 5.68
SmLINC03927-IBu 0 0.00 3.30 7.68 8.27
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
Smp_060220.1 0 0.75 -0.46 4.56 5.32

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_060220.1 SmLINC00004-IBu 0.85 5.42e-05 9.00e-04
Smp_060220.1 SmLINC00369-IBu 0.80 2.00e-04 3.10e-03
Smp_060220.1 SmLINC00525-IBu 0.88 1.11e-05 2.00e-04
Smp_060220.1 SmLINC00548-IBu 0.80 3.00e-04 3.20e-03
Smp_060220.1 SmLINC00633-IBu 0.82 1.00e-04 2.00e-03
Smp_060220.1 SmLINC01084-IBu 0.88 9.10e-06 2.00e-04
Smp_060220.1 SmLINC01122-IBu 0.90 2.59e-06 1.00e-04
Smp_060220.1 SmLINC01431-IBu 0.86 3.71e-05 6.00e-04
Smp_060220.1 SmLINC01432-IBu 0.83 1.00e-04 1.60e-03
Smp_060220.1 SmLINC01538-IBu 0.82 1.00e-04 1.80e-03
Smp_060220.1 SmLINC01569-IBu 0.90 3.86e-06 1.00e-04
Smp_060220.1 SmLINC01733-IBu 0.85 5.71e-05 9.00e-04
Smp_060220.1 SmLINC03927-IBu 0.82 1.00e-04 1.90e-03
Smp_060220.1 SmLINC04421-IBu 0.85 3.93e-05 7.00e-04
Smp_060220.1 SmLINC04423-IBu 0.91 1.46e-06 6.74e-05
Smp_060220.1 SmLINC04478-IBu 0.93 2.11e-07 1.72e-05
Smp_060220.1 SmLINC04521-IBu 0.85 4.13e-05 7.00e-04
Smp_060220.1 SmLINC05289-IBu 0.81 1.00e-04 2.20e-03
Smp_060220.1 SmLINC05604-IBu 0.83 1.00e-04 1.40e-03
Smp_060220.1 SmLINC06024-IBu 0.91 1.93e-06 8.21e-05
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_040970.2 0 9.27 9.42 14.46 14.83
Smp_050350.3 0 7.35 7.57 12.17 13.18
Smp_060220.1 0 0.75 -0.46 4.56 5.32
Smp_079420.1 0 6.65 2.37 11.69 12.23
Smp_090140.1 0 2.57 9.09 11.94 12.46
Smp_094050.1 0 0.00 6.75 11.34 12.21

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_060220.1 Smp_040970.2 0.92 6.68e-07 4.02e-05
Smp_050350.3 Smp_060220.1 0.90 3.34e-06 1.00e-04
Smp_060220.1 Smp_079420.1 0.90 3.41e-06 1.00e-04
Smp_090140.1 Smp_060220.1 0.93 3.14e-07 2.38e-05
Smp_094050.1 Smp_060220.1 0.94 1.26e-07 1.27e-05