Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_060190.4 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00372-IBu 0 1.42 3.02 -1.83 -2.95
SmLINC01316-IBu 0 -0.35 0.57 -11.60 -4.95
SmLINC04430-IBu 0 1.35 4.06 1.40 0.01
SmLINC04947-IBu 0 -5.01 1.51 -1.96 -5.01
SmLINC05559-IBu 0 -0.72 2.59 -1.58 -1.98
SmLINC06700-IBu 0 2.95 4.73 1.69 -0.46
SmLINC06836-IBu 0 5.91 8.23 0.00 0.00
Smp_060190.4 0 -0.15 1.63 -8.76 -8.76

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_060190.4 SmLINC00372-IBu 0.97 2.82e-10 2.08e-07
Smp_060190.4 SmLINC01316-IBu 0.85 5.05e-05 8.00e-04
Smp_060190.4 SmLINC04430-IBu 0.92 1.03e-06 5.25e-05
Smp_060190.4 SmLINC04947-IBu 0.94 6.11e-08 7.32e-06
Smp_060190.4 SmLINC05559-IBu 0.98 7.88e-11 9.17e-08
Smp_060190.4 SmLINC06700-IBu 0.85 5.64e-05 9.00e-04
Smp_060190.4 SmLINC06836-IBu 0.97 6.04e-10 3.41e-07
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_010140.2 0 7.72 10.83 -3.68 -3.68
Smp_032120.1 0 0.03 1.02 -10.65 -10.65
Smp_060190.4 0 -0.15 1.63 -8.76 -8.76
Smp_062070.1 0 9.47 10.97 6.18 8.79
Smp_084940.2 0 10.34 11.98 9.66 9.92
Smp_103540.1 0 11.43 12.63 8.84 9.65
Smp_138080.1 0 4.97 10.75 -3.79 3.75
Smp_159070.3 0 -0.25 1.24 -10.95 -4.48
Smp_159150.1 0 12.28 13.98 12.38 11.81

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_010140.2 Smp_060190.4 0.94 1.78e-07 1.61e-05
Smp_060190.4 Smp_032120.1 0.94 9.56e-08 1.04e-05
Smp_060190.4 Smp_062070.1 0.92 5.28e-07 3.41e-05
Smp_060190.4 Smp_084940.2 0.91 1.85e-06 8.23e-05
Smp_103540.1 Smp_060190.4 0.90 3.05e-06 1.00e-04
Smp_138080.1 Smp_060190.4 0.94 7.12e-08 8.58e-06
Smp_060190.4 Smp_159070.3 0.98 1.47e-11 3.49e-08
Smp_060190.4 Smp_159150.1 0.91 2.19e-06 9.28e-05