Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_059930.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02039-IBu 0 -3.01 -8.41 -3.05 -3.36
SmLINC06892-IBu 0 -2.10 -3.44 -12.52 -12.52
Smp_059930.1 0 -3.75 -7.72 -3.31 -3.23

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_059930.1 SmLINC02039-IBu 0.91 1.37e-06 6.44e-05
Smp_059930.1 SmLINC06892-IBu 0.90 4.80e-06 1.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_009650.2 0 -7.49 -7.79 -8.95 -11.71
Smp_035270.1 0 -9.88 -14.08 -13.91 -7.32
Smp_036400.2 0 -2.63 -11.95 -8.03 -7.25
Smp_059930.1 0 -3.75 -7.72 -3.31 -3.23
Smp_106390.1 0 -2.35 -4.90 -10.78 -6.23
Smp_133770.1 0 -4.18 -7.68 -11.38 -11.45
Smp_150690.2 0 -2.07 -12.58 -12.58 -12.58
Smp_153240.1 0 -4.59 -8.67 -11.23 -11.04
Smp_178240.1 0 -3.79 -9.33 -8.87 -11.00
Smp_184460.1 0 -2.24 -5.26 -13.63 -13.63
Smp_185360.1 0 -2.43 -5.85 -12.83 -12.83

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_059930.1 Smp_009650.2 0.97 1.02e-09 5.17e-07
Smp_035270.1 Smp_059930.1 0.92 7.48e-07 4.35e-05
Smp_036400.2 Smp_059930.1 0.96 4.38e-09 1.32e-06
Smp_106390.1 Smp_059930.1 0.91 1.23e-06 6.18e-05
Smp_059930.1 Smp_133770.1 0.91 1.25e-06 6.26e-05
Smp_150690.2 Smp_059930.1 0.92 9.14e-07 5.01e-05
Smp_059930.1 Smp_153240.1 0.93 4.17e-07 2.90e-05
Smp_178240.1 Smp_059930.1 0.96 9.85e-09 2.25e-06
Smp_059930.1 Smp_184460.1 0.92 5.70e-07 3.60e-05
Smp_059930.1 Smp_185360.1 0.92 6.27e-07 3.84e-05