Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_059530.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00372-IBu 0 1.42 3.02 -1.83 -2.95
SmLINC01316-IBu 0 -0.35 0.57 -11.60 -4.95
SmLINC04074-IBu 0 7.29 6.66 0.00 0.00
SmLINC05559-IBu 0 -0.72 2.59 -1.58 -1.98
SmLINC06646-IBu 0 1.59 1.70 -7.49 -7.49
SmLINC06836-IBu 0 5.91 8.23 0.00 0.00
Smp_059530.1 0 2.86 3.32 -11.10 -11.10

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_059530.1 SmLINC00372-IBu 0.91 1.28e-06 6.14e-05
Smp_059530.1 SmLINC01316-IBu 0.88 1.19e-05 3.00e-04
Smp_059530.1 SmLINC04074-IBu 0.84 8.70e-05 1.20e-03
Smp_059530.1 SmLINC05559-IBu 0.80 3.00e-04 3.20e-03
Smp_059530.1 SmLINC06646-IBu 0.91 1.81e-06 7.83e-05
Smp_059530.1 SmLINC06836-IBu 0.88 1.00e-05 2.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00372-IBu 0 1.42 3.02 -1.83 -2.95
SmLINC00781-IBu 0 6.19 6.44 3.58 2.95
SmLINC02626-IBu 0 8.15 9.29 3.73 6.59
SmLINC02970-IBu 0 2.59 3.54 0.54 -1.36
SmLINC03132-IBu 0 3.76 4.91 1.54 -0.47
SmLINC03718-IBu 0 6.68 7.60 6.73 4.75
SmLINC03739-IBu 0 0.68 2.57 -1.44 -2.85
SmLINC03953-IBu 0 1.67 3.25 -2.76 -1.08
SmLINC04215-IBu 0 6.59 8.42 5.71 3.29
SmLINC05660-IBu 0 5.07 6.19 0.00 6.57
SmLINC06048-IBu 0 0.79 1.93 -4.19 -7.12
SmLINC06180-IBu 0 1.21 3.01 -2.19 -1.74
SmLINC06646-IBu 0 1.59 1.70 -7.49 -7.49
SmLINC07014-IBu 0 0.31 0.27 -11.64 -11.64
Smp_015070.2 0 4.80 5.60 1.08 -0.65
Smp_017650.1 0 9.51 10.68 -7.98 0.00
Smp_018800.1 0 3.14 4.22 -2.08 -1.80
Smp_019260.2 0 0.65 2.01 -0.64 -4.31
Smp_021920.1 0 0.33 1.47 -5.43 -11.17
Smp_027990.1 0 1.00 2.03 -4.13 -5.46
Smp_032120.1 0 0.03 1.02 -10.65 -10.65
Smp_033670.2 0 1.59 2.15 -4.87 -4.87
Smp_034840.1 0 12.23 13.88 0.00 0.00
Smp_036270.3 0 1.18 2.21 -10.17 -10.17
Smp_049600.3 0 1.80 2.94 -9.17 -1.90
Smp_052290.1 0 1.68 2.86 -1.36 -2.94
Smp_059340.3 0 0.76 1.23 -11.82 -11.82
Smp_059530.1 0 2.86 3.32 -11.10 -11.10
Smp_062070.1 0 9.47 10.97 6.18 8.79
Smp_075290.4 0 0.20 2.62 -2.13 -0.42
Smp_079260.1 0 1.54 2.23 -2.79 -3.15
Smp_083380.2 0 9.13 10.31 0.00 0.00
Smp_084940.2 0 10.34 11.98 9.66 9.92
Smp_087070.1 0 2.08 2.60 -2.67 -4.80
Smp_103540.1 0 11.43 12.63 8.84 9.65
Smp_105710.2 0 7.84 8.99 0.00 0.00
Smp_118960.1 0 -0.29 0.29 -8.48 -0.88
Smp_123000.2 0 1.85 1.78 -1.88 -2.33
Smp_123870.1 0 -0.64 -0.72 -4.74 -5.09
Smp_125830.1 0 3.00 3.31 -4.80 -4.80
Smp_126560.1 0 1.05 1.45 -4.09 -4.98
Smp_129780.1 0 0.66 -0.31 -3.14 -4.36
Smp_139940.1 0 3.07 4.50 -0.39 -2.02
Smp_140130.1 0 1.66 2.18 -1.05 -2.58
Smp_141630.4 0 12.63 13.76 12.50 12.34
Smp_142980.1 0 0.95 0.31 -2.54 -3.71
Smp_143180.1 0 1.31 2.18 -4.27 -1.25
Smp_145950.1 0 1.16 2.62 -4.07 -0.95
Smp_146920.1 0 0.99 1.37 -7.20 -7.20
Smp_151220.1 0 1.28 1.74 -3.16 -3.91
Smp_152170.1 0 2.88 3.15 -0.68 -0.83
Smp_153210.1 0 3.24 5.11 0.30 -0.00
Smp_155690.1 0 0.49 1.13 -3.13 -4.07
Smp_157270.1 0 3.45 4.02 -0.36 -1.80
Smp_157280.1 0 4.32 5.40 2.85 1.60
Smp_157840.1 0 1.84 2.05 -4.37 -2.80
Smp_159070.3 0 -0.25 1.24 -10.95 -4.48
Smp_160670.1 0 1.07 2.08 -4.35 -3.20
Smp_161270.1 0 1.27 1.64 -8.43 -8.43
Smp_161280.1 0 1.17 1.48 -9.00 -4.95
Smp_169500.1 0 1.36 1.90 -2.93 -5.45
Smp_174170.1 0 2.27 3.86 1.11 -0.90
Smp_180630.1 0 0.12 1.09 -6.32 -9.26
Smp_190370.1 0 1.12 2.62 -1.76 -2.23
Smp_194140.1 0 0.06 0.11 -9.88 -9.88
Smp_194670.1 0 1.55 1.93 -1.67 -3.11
Smp_196410.1 0 0.98 1.80 -3.57 -2.94

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_059530.1 SmLINC00372-IBu 0.91 1.28e-06 6.37e-05
Smp_059530.1 SmLINC00781-IBu 0.92 6.22e-07 3.83e-05
Smp_059530.1 SmLINC02626-IBu 0.94 9.66e-08 1.05e-05
Smp_059530.1 SmLINC02970-IBu 0.96 3.78e-09 1.20e-06
Smp_059530.1 SmLINC03132-IBu 0.96 1.23e-08 2.62e-06
Smp_059530.1 SmLINC03718-IBu 0.90 4.62e-06 1.00e-04
Smp_059530.1 SmLINC03739-IBu 0.91 2.43e-06 1.00e-04
Smp_059530.1 SmLINC03953-IBu 0.94 1.30e-07 1.30e-05
Smp_059530.1 SmLINC04215-IBu 0.92 6.47e-07 3.93e-05
Smp_059530.1 SmLINC05660-IBu 0.90 3.46e-06 1.00e-04
Smp_059530.1 SmLINC06048-IBu 0.91 1.64e-06 7.59e-05
Smp_059530.1 SmLINC06180-IBu 0.90 3.92e-06 1.00e-04
Smp_059530.1 SmLINC06646-IBu 0.91 1.81e-06 8.11e-05
Smp_059530.1 SmLINC07014-IBu 0.92 8.66e-07 4.82e-05
Smp_059530.1 Smp_015070.2 0.92 6.42e-07 3.91e-05
Smp_059530.1 Smp_017650.1 0.93 2.85e-07 2.22e-05
Smp_059530.1 Smp_018800.1 0.96 1.23e-08 2.62e-06
Smp_059530.1 Smp_019260.2 0.92 6.86e-07 4.09e-05
Smp_059530.1 Smp_021920.1 0.92 1.01e-06 5.40e-05
Smp_059530.1 Smp_027990.1 0.93 2.71e-07 2.15e-05
Smp_059530.1 Smp_032120.1 0.92 9.85e-07 5.28e-05
Smp_059530.1 Smp_033670.2 0.92 7.30e-07 4.27e-05
Smp_059530.1 Smp_034840.1 0.95 3.66e-08 5.47e-06
Smp_059530.1 Smp_036270.3 0.90 4.12e-06 1.00e-04
Smp_059530.1 Smp_049600.3 0.95 5.26e-08 6.98e-06
Smp_059530.1 Smp_052290.1 0.96 8.17e-09 1.99e-06
Smp_059530.1 Smp_059340.3 0.96 1.12e-08 2.47e-06
Smp_059530.1 Smp_062070.1 0.92 5.62e-07 3.56e-05
Smp_059530.1 Smp_075290.4 0.92 8.70e-07 4.83e-05
Smp_059530.1 Smp_079260.1 0.96 1.41e-08 2.87e-06
Smp_059530.1 Smp_083380.2 0.97 1.13e-09 5.52e-07
Smp_059530.1 Smp_084940.2 0.95 1.46e-08 2.94e-06
Smp_059530.1 Smp_087070.1 0.90 3.81e-06 1.00e-04
Smp_103540.1 Smp_059530.1 0.95 1.99e-08 3.62e-06
Smp_059530.1 Smp_105710.2 0.93 2.15e-07 1.83e-05
Smp_059530.1 Smp_118960.1 0.94 8.76e-08 9.89e-06
Smp_059530.1 Smp_123000.2 0.92 8.63e-07 4.81e-05
Smp_059530.1 Smp_123870.1 0.90 4.07e-06 1.00e-04
Smp_059530.1 Smp_125830.1 0.91 1.56e-06 7.31e-05
Smp_059530.1 Smp_126560.1 0.94 8.80e-08 9.92e-06
Smp_059530.1 Smp_129780.1 0.93 4.84e-07 3.21e-05
Smp_059530.1 Smp_139940.1 0.90 3.10e-06 1.00e-04
Smp_059530.1 Smp_140130.1 0.92 7.93e-07 4.53e-05
Smp_059530.1 Smp_141630.4 0.90 3.21e-06 1.00e-04
Smp_059530.1 Smp_142980.1 0.98 6.17e-11 8.60e-08
Smp_059530.1 Smp_143180.1 0.93 2.55e-07 2.06e-05
Smp_059530.1 Smp_145950.1 0.96 1.07e-08 2.39e-06
Smp_059530.1 Smp_146920.1 0.93 2.66e-07 2.12e-05
Smp_059530.1 Smp_151220.1 0.95 5.17e-08 6.91e-06
Smp_059530.1 Smp_152170.1 0.92 5.49e-07 3.50e-05
Smp_059530.1 Smp_153210.1 0.94 8.68e-08 9.82e-06
Smp_059530.1 Smp_155690.1 0.91 1.38e-06 6.71e-05
Smp_059530.1 Smp_157270.1 0.92 9.54e-07 5.16e-05
Smp_059530.1 Smp_157280.1 0.92 5.60e-07 3.55e-05
Smp_059530.1 Smp_157840.1 0.91 2.37e-06 9.83e-05
Smp_059530.1 Smp_159070.3 0.90 2.82e-06 1.00e-04
Smp_059530.1 Smp_160670.1 0.92 6.68e-07 4.02e-05
Smp_059530.1 Smp_161270.1 0.92 1.00e-06 5.34e-05
Smp_059530.1 Smp_161280.1 0.95 1.98e-08 3.62e-06
Smp_059530.1 Smp_169500.1 0.96 5.04e-09 1.45e-06
Smp_059530.1 Smp_174170.1 0.93 3.07e-07 2.34e-05
Smp_180630.1 Smp_059530.1 0.91 1.53e-06 7.20e-05
Smp_059530.1 Smp_190370.1 0.92 6.69e-07 4.02e-05
Smp_059530.1 Smp_194140.1 0.91 1.93e-06 8.49e-05
Smp_194670.1 Smp_059530.1 0.96 3.09e-09 1.05e-06
Smp_059530.1 Smp_196410.1 0.94 9.36e-08 1.03e-05