Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_059350.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00484-IBu 0 -0.02 2.64 6.82 5.24
SmLINC00554-IBu 0 -0.37 -11.45 -11.45 -2.78
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC03693-IBu 0 0.04 0.11 4.65 4.21
SmLINC04475-IBu 0 -0.34 2.17 4.09 3.42
SmLINC04759-IBu 0 5.51 6.18 8.81 7.80
SmLINC04769-IBu 0 1.36 2.94 5.73 3.10
SmLINC05632-IBu 0 4.56 6.06 7.28 6.53
SmLINC05870-IBu 0 0.25 4.65 5.77 4.71
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06221-IBu 0 2.16 3.44 6.39 5.80
SmLINC06449-IBu 0 2.33 4.31 7.30 6.63
SmLINC06543-IBu 0 -0.52 0.39 3.89 3.37
Smp_059350.1 0 3.85 6.63 8.17 7.92

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_059350.1 SmLINC00484-IBu 0.80 2.00e-04 2.80e-03
Smp_059350.1 SmLINC00554-IBu -0.80 2.00e-04 3.00e-03
Smp_059350.1 SmLINC02255-IBu -0.80 3.00e-04 3.20e-03
Smp_059350.1 SmLINC02657-IBu -0.80 2.00e-04 3.00e-03
Smp_059350.1 SmLINC03693-IBu 0.80 2.00e-04 3.00e-03
Smp_059350.1 SmLINC04475-IBu 0.82 1.00e-04 1.70e-03
Smp_059350.1 SmLINC04759-IBu 0.82 1.00e-04 1.90e-03
Smp_059350.1 SmLINC04769-IBu 0.82 1.00e-04 1.90e-03
Smp_059350.1 SmLINC05632-IBu 0.90 3.71e-06 1.00e-04
Smp_059350.1 SmLINC05870-IBu 0.87 2.01e-05 4.00e-04
Smp_059350.1 SmLINC06128-IBu -0.80 3.00e-04 3.30e-03
Smp_059350.1 SmLINC06221-IBu 0.85 4.54e-05 7.00e-04
Smp_059350.1 SmLINC06449-IBu 0.83 9.00e-05 1.30e-03
Smp_059350.1 SmLINC06543-IBu 0.80 3.00e-04 3.30e-03