Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_059340.3 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00372-IBu 0 1.42 3.02 -1.83 -2.95
SmLINC01316-IBu 0 -0.35 0.57 -11.60 -4.95
SmLINC01979-IBu 0 1.86 0.63 -5.36 -5.36
SmLINC02646-IBu 0 0.70 0.79 -6.84 -2.55
SmLINC04074-IBu 0 7.29 6.66 0.00 0.00
SmLINC06646-IBu 0 1.59 1.70 -7.49 -7.49
SmLINC06700-IBu 0 2.95 4.73 1.69 -0.46
SmLINC06836-IBu 0 5.91 8.23 0.00 0.00
Smp_059340.3 0 0.76 1.23 -11.82 -11.82

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_059340.3 SmLINC00372-IBu 0.92 9.66e-07 5.01e-05
Smp_059340.3 SmLINC01316-IBu 0.93 2.96e-07 2.18e-05
Smp_059340.3 SmLINC01979-IBu 0.80 2.00e-04 2.90e-03
Smp_059340.3 SmLINC02646-IBu 0.91 2.01e-06 8.45e-05
Smp_059340.3 SmLINC04074-IBu 0.85 4.81e-05 8.00e-04
Smp_059340.3 SmLINC06646-IBu 0.96 4.20e-09 1.20e-06
Smp_059340.3 SmLINC06700-IBu 0.86 3.45e-05 6.00e-04
Smp_059340.3 SmLINC06836-IBu 0.88 1.31e-05 3.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00372-IBu 0 1.42 3.02 -1.83 -2.95
SmLINC00513-IBu 0 6.74 8.35 0.00 3.11
SmLINC00781-IBu 0 6.19 6.44 3.58 2.95
SmLINC01316-IBu 0 -0.35 0.57 -11.60 -4.95
SmLINC01453-IBu 0 3.93 3.65 1.37 -4.56
SmLINC02626-IBu 0 8.15 9.29 3.73 6.59
SmLINC02646-IBu 0 0.70 0.79 -6.84 -2.55
SmLINC02970-IBu 0 2.59 3.54 0.54 -1.36
SmLINC02993-IBu 0 0.30 0.61 -4.78 -4.38
SmLINC03132-IBu 0 3.76 4.91 1.54 -0.47
SmLINC03953-IBu 0 1.67 3.25 -2.76 -1.08
SmLINC05348-IBu 0 -0.21 0.48 -2.93 -5.35
SmLINC06048-IBu 0 0.79 1.93 -4.19 -7.12
SmLINC06646-IBu 0 1.59 1.70 -7.49 -7.49
SmLINC07012-IBu 0 4.23 5.09 -1.27 -4.32
SmLINC07014-IBu 0 0.31 0.27 -11.64 -11.64
Smp_012010.1 0 0.26 0.29 -5.48 -5.97
Smp_015070.2 0 4.80 5.60 1.08 -0.65
Smp_017650.1 0 9.51 10.68 -7.98 0.00
Smp_018590.1 0 0.89 1.74 -2.48 -5.97
Smp_018800.1 0 3.14 4.22 -2.08 -1.80
Smp_019260.2 0 0.65 2.01 -0.64 -4.31
Smp_021340.3 0 9.76 11.05 9.34 9.26
Smp_022320.1 0 0.31 -0.15 -2.49 -6.20
Smp_024820.1 0 4.10 4.75 1.46 1.82
Smp_027990.1 0 1.00 2.03 -4.13 -5.46
Smp_029240.1 0 3.97 4.74 2.59 1.22
Smp_031770.3 0 0.52 1.55 -9.48 -9.48
Smp_032120.1 0 0.03 1.02 -10.65 -10.65
Smp_032320.2 0 -0.17 0.68 -9.42 -9.42
Smp_032750.1 0 0.69 0.55 -6.01 -6.60
Smp_033670.2 0 1.59 2.15 -4.87 -4.87
Smp_034840.1 0 12.23 13.88 0.00 0.00
Smp_036270.3 0 1.18 2.21 -10.17 -10.17
Smp_037610.1 0 1.63 1.24 -3.86 -4.68
Smp_049600.3 0 1.80 2.94 -9.17 -1.90
Smp_052290.1 0 1.68 2.86 -1.36 -2.94
Smp_059340.3 0 0.76 1.23 -11.82 -11.82
Smp_059530.1 0 2.86 3.32 -11.10 -11.10
Smp_062070.1 0 9.47 10.97 6.18 8.79
Smp_062610.2 0 -1.05 -0.32 -6.81 -10.38
Smp_068270.3 0 4.48 4.31 -7.70 1.13
Smp_079260.1 0 1.54 2.23 -2.79 -3.15
Smp_083380.2 0 9.13 10.31 0.00 0.00
Smp_084940.2 0 10.34 11.98 9.66 9.92
Smp_087070.1 0 2.08 2.60 -2.67 -4.80
Smp_091190.1 0 2.07 2.52 -8.48 -3.36
Smp_092780.1 0 -0.13 -0.30 -4.81 -4.98
Smp_093690.1 0 0.09 0.67 -3.40 -3.42
Smp_098370.1 0 9.63 11.25 6.43 9.48
Smp_099560.1 0 8.15 8.89 -2.27 -2.27
Smp_103540.1 0 11.43 12.63 8.84 9.65
Smp_103930.1 0 0.87 2.20 -7.48 0.71
Smp_105710.2 0 7.84 8.99 0.00 0.00
Smp_118960.1 0 -0.29 0.29 -8.48 -0.88
Smp_123000.2 0 1.85 1.78 -1.88 -2.33
Smp_123870.1 0 -0.64 -0.72 -4.74 -5.09
Smp_126560.1 0 1.05 1.45 -4.09 -4.98
Smp_129780.1 0 0.66 -0.31 -3.14 -4.36
Smp_136120.1 0 5.65 6.93 4.13 3.70
Smp_136840.1 0 1.29 1.39 -6.10 -6.10
Smp_138140.1 0 2.02 2.69 -3.31 -2.76
Smp_139940.1 0 3.07 4.50 -0.39 -2.02
Smp_139980.1 0 1.20 1.27 -1.25 -4.01
Smp_140130.1 0 1.66 2.18 -1.05 -2.58
Smp_142980.1 0 0.95 0.31 -2.54 -3.71
Smp_143180.1 0 1.31 2.18 -4.27 -1.25
Smp_144120.1 0 1.28 2.86 -1.28 -2.28
Smp_145950.1 0 1.16 2.62 -4.07 -0.95
Smp_146920.1 0 0.99 1.37 -7.20 -7.20
Smp_148110.1 0 1.60 3.38 -2.98 -3.24
Smp_149220.1 0 0.14 0.72 -3.31 -3.61
Smp_149870.1 0 0.08 0.15 -3.14 -8.77
Smp_151220.1 0 1.28 1.74 -3.16 -3.91
Smp_152170.1 0 2.88 3.15 -0.68 -0.83
Smp_153210.1 0 3.24 5.11 0.30 -0.00
Smp_155170.1 0 2.84 3.14 -1.92 0.05
Smp_155690.1 0 0.49 1.13 -3.13 -4.07
Smp_157270.1 0 3.45 4.02 -0.36 -1.80
Smp_157280.1 0 4.32 5.40 2.85 1.60
Smp_157840.1 0 1.84 2.05 -4.37 -2.80
Smp_158680.1 0 0.18 0.75 -3.19 -3.53
Smp_159070.3 0 -0.25 1.24 -10.95 -4.48
Smp_159380.1 0 0.56 1.21 -4.02 -3.82
Smp_160670.1 0 1.07 2.08 -4.35 -3.20
Smp_161270.1 0 1.27 1.64 -8.43 -8.43
Smp_161280.1 0 1.17 1.48 -9.00 -4.95
Smp_168800.1 0 0.13 -0.51 -10.46 -10.46
Smp_169500.1 0 1.36 1.90 -2.93 -5.45
Smp_171420.1 0 2.93 4.14 1.74 -0.67
Smp_174170.1 0 2.27 3.86 1.11 -0.90
Smp_174750.1 0 1.35 2.65 -1.87 -1.39
Smp_180050.1 0 1.06 0.86 -2.29 -5.29
Smp_180630.1 0 0.12 1.09 -6.32 -9.26
Smp_189180.2 0 -0.25 -0.54 -4.07 -4.89
Smp_190370.1 0 1.12 2.62 -1.76 -2.23
Smp_190900.1 0 0.50 -0.24 -3.60 -3.79
Smp_194110.1 0 0.85 0.42 -9.97 -9.97
Smp_194140.1 0 0.06 0.11 -9.88 -9.88
Smp_194150.1 0 0.10 -0.41 -9.52 -9.52
Smp_194670.1 0 1.55 1.93 -1.67 -3.11
Smp_196410.1 0 0.98 1.80 -3.57 -2.94
Smp_197150.1 0 -0.08 0.36 -3.43 -4.33
Smp_200120.1 0 0.50 0.80 -8.32 -11.63

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_059340.3 SmLINC00372-IBu 0.92 9.66e-07 5.21e-05
Smp_059340.3 SmLINC00513-IBu 0.91 2.03e-06 8.80e-05
Smp_059340.3 SmLINC00781-IBu 0.96 3.12e-09 1.06e-06
Smp_059340.3 SmLINC01316-IBu 0.93 2.96e-07 2.28e-05
Smp_059340.3 SmLINC01453-IBu 0.92 1.05e-06 5.52e-05
Smp_059340.3 SmLINC02626-IBu 0.94 1.26e-07 1.26e-05
Smp_059340.3 SmLINC02646-IBu 0.91 2.01e-06 8.75e-05
Smp_059340.3 SmLINC02970-IBu 0.96 5.34e-09 1.50e-06
Smp_059340.3 SmLINC02993-IBu 0.92 9.55e-07 5.16e-05
Smp_059340.3 SmLINC03132-IBu 0.96 9.94e-09 2.27e-06
Smp_059340.3 SmLINC03953-IBu 0.95 4.60e-08 6.38e-06
Smp_059340.3 SmLINC05348-IBu 0.91 2.12e-06 9.06e-05
Smp_059340.3 SmLINC06048-IBu 0.97 2.10e-09 8.23e-07
Smp_059340.3 SmLINC06646-IBu 0.96 4.20e-09 1.29e-06
Smp_059340.3 SmLINC07012-IBu 0.92 1.07e-06 5.62e-05
Smp_059340.3 SmLINC07014-IBu 0.97 5.65e-10 3.53e-07
Smp_012010.1 Smp_059340.3 0.94 1.43e-07 1.38e-05
Smp_015070.2 Smp_059340.3 0.93 2.94e-07 2.27e-05
Smp_017650.1 Smp_059340.3 0.96 3.82e-09 1.21e-06
Smp_018590.1 Smp_059340.3 0.90 3.29e-06 1.00e-04
Smp_059340.3 Smp_018800.1 0.94 9.20e-08 1.02e-05
Smp_019260.2 Smp_059340.3 0.92 1.16e-06 5.94e-05
Smp_021340.3 Smp_059340.3 0.92 8.11e-07 4.60e-05
Smp_022320.1 Smp_059340.3 0.96 7.25e-09 1.84e-06
Smp_024820.1 Smp_059340.3 0.93 5.05e-07 3.31e-05
Smp_027990.1 Smp_059340.3 0.97 6.36e-10 3.81e-07
Smp_029240.1 Smp_059340.3 0.91 1.26e-06 6.30e-05
Smp_031770.3 Smp_059340.3 0.93 3.38e-07 2.50e-05
Smp_059340.3 Smp_032120.1 0.94 1.32e-07 1.31e-05
Smp_032320.2 Smp_059340.3 0.94 1.31e-07 1.30e-05
Smp_032750.1 Smp_059340.3 0.91 1.59e-06 7.42e-05
Smp_033670.2 Smp_059340.3 0.93 3.68e-07 2.65e-05
Smp_034840.1 Smp_059340.3 0.94 1.77e-07 1.60e-05
Smp_036270.3 Smp_059340.3 0.94 9.45e-08 1.04e-05
Smp_037610.1 Smp_059340.3 0.92 1.18e-06 5.99e-05
Smp_049600.3 Smp_059340.3 0.96 3.48e-09 1.14e-06
Smp_052290.1 Smp_059340.3 0.96 4.42e-09 1.33e-06
Smp_059530.1 Smp_059340.3 0.96 1.12e-08 2.47e-06
Smp_062070.1 Smp_059340.3 0.92 8.42e-07 4.73e-05
Smp_062610.2 Smp_059340.3 0.95 2.59e-08 4.32e-06
Smp_059340.3 Smp_068270.3 0.94 1.54e-07 1.46e-05
Smp_079260.1 Smp_059340.3 0.99 1.29e-12 7.76e-09
Smp_083380.2 Smp_059340.3 0.96 1.17e-08 2.54e-06
Smp_084940.2 Smp_059340.3 0.93 2.04e-07 1.76e-05
Smp_087070.1 Smp_059340.3 0.93 2.60e-07 2.08e-05
Smp_091190.1 Smp_059340.3 0.90 3.66e-06 1.00e-04
Smp_059340.3 Smp_092780.1 0.90 4.30e-06 1.00e-04
Smp_093690.1 Smp_059340.3 0.92 8.69e-07 4.83e-05
Smp_098370.1 Smp_059340.3 0.92 1.06e-06 5.57e-05
Smp_099560.1 Smp_059340.3 0.94 1.20e-07 1.23e-05
Smp_103540.1 Smp_059340.3 0.95 2.91e-08 4.68e-06
Smp_103930.1 Smp_059340.3 0.91 1.21e-06 6.12e-05
Smp_105710.2 Smp_059340.3 0.92 9.14e-07 5.01e-05
Smp_118960.1 Smp_059340.3 0.94 1.72e-07 1.57e-05
Smp_123000.2 Smp_059340.3 0.94 7.58e-08 8.96e-06
Smp_123870.1 Smp_059340.3 0.95 3.70e-08 5.50e-06
Smp_126560.1 Smp_059340.3 0.98 1.24e-11 3.15e-08
Smp_129780.1 Smp_059340.3 0.96 5.56e-09 1.54e-06
Smp_136120.1 Smp_059340.3 0.91 1.92e-06 8.46e-05
Smp_136840.1 Smp_059340.3 0.90 3.25e-06 1.00e-04
Smp_138140.1 Smp_059340.3 0.93 2.73e-07 2.16e-05
Smp_059340.3 Smp_139940.1 0.91 2.10e-06 9.02e-05
Smp_139980.1 Smp_059340.3 0.91 1.65e-06 7.61e-05
Smp_140130.1 Smp_059340.3 0.97 2.26e-09 8.61e-07
Smp_142980.1 Smp_059340.3 0.96 2.47e-09 9.14e-07
Smp_143180.1 Smp_059340.3 0.97 1.01e-09 5.14e-07
Smp_059340.3 Smp_144120.1 0.91 2.43e-06 9.99e-05
Smp_145950.1 Smp_059340.3 0.92 1.17e-06 5.97e-05
Smp_059340.3 Smp_146920.1 0.95 2.35e-08 4.05e-06
Smp_148110.1 Smp_059340.3 0.90 2.56e-06 1.00e-04
Smp_149220.1 Smp_059340.3 0.90 3.54e-06 1.00e-04
Smp_149870.1 Smp_059340.3 0.94 9.80e-08 1.06e-05
Smp_151220.1 Smp_059340.3 0.96 7.74e-09 1.92e-06
Smp_152170.1 Smp_059340.3 0.97 1.90e-09 7.69e-07
Smp_153210.1 Smp_059340.3 0.93 2.18e-07 1.84e-05
Smp_155170.1 Smp_059340.3 0.93 4.98e-07 3.27e-05
Smp_155690.1 Smp_059340.3 0.95 5.25e-08 6.98e-06
Smp_157270.1 Smp_059340.3 0.96 4.45e-09 1.34e-06
Smp_157280.1 Smp_059340.3 0.94 9.24e-08 1.02e-05
Smp_157840.1 Smp_059340.3 0.95 3.57e-08 5.38e-06
Smp_059340.3 Smp_158680.1 0.90 2.87e-06 1.00e-04
Smp_159070.3 Smp_059340.3 0.90 2.70e-06 1.00e-04
Smp_059340.3 Smp_159380.1 0.93 3.93e-07 2.78e-05
Smp_160670.1 Smp_059340.3 0.94 9.25e-08 1.02e-05
Smp_161270.1 Smp_059340.3 0.96 3.72e-09 1.19e-06
Smp_161280.1 Smp_059340.3 0.98 1.58e-10 1.56e-07
Smp_168800.1 Smp_059340.3 0.94 6.09e-08 7.72e-06
Smp_169500.1 Smp_059340.3 0.99 1.83e-12 9.63e-09
Smp_171420.1 Smp_059340.3 0.90 4.41e-06 1.00e-04
Smp_174170.1 Smp_059340.3 0.92 6.33e-07 3.87e-05
Smp_174750.1 Smp_059340.3 0.92 7.61e-07 4.40e-05
Smp_180050.1 Smp_059340.3 0.90 4.10e-06 1.00e-04
Smp_180630.1 Smp_059340.3 0.97 1.88e-09 7.64e-07
Smp_189180.2 Smp_059340.3 0.97 1.62e-09 6.96e-07
Smp_190370.1 Smp_059340.3 0.95 4.98e-08 6.73e-06
Smp_059340.3 Smp_190900.1 0.92 8.30e-07 4.68e-05
Smp_194110.1 Smp_059340.3 0.91 1.61e-06 7.46e-05
Smp_059340.3 Smp_194140.1 0.93 4.98e-07 3.28e-05
Smp_194150.1 Smp_059340.3 0.90 4.65e-06 1.00e-04
Smp_194670.1 Smp_059340.3 0.97 8.01e-10 4.42e-07
Smp_196410.1 Smp_059340.3 0.98 1.55e-10 1.54e-07
Smp_197150.1 Smp_059340.3 0.94 9.67e-08 1.05e-05
Smp_200120.1 Smp_059340.3 0.91 1.71e-06 7.81e-05