Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_059210.7 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01429-IBu 0 1.94 -0.56 -4.06 -6.10
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01979-IBu 0 1.86 0.63 -5.36 -5.36
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02646-IBu 0 0.70 0.79 -6.84 -2.55
SmLINC03111-IBu 0 3.25 1.95 -5.91 -5.91
SmLINC03395-IBu 0 1.75 0.29 -4.35 -2.74
SmLINC04074-IBu 0 7.29 6.66 0.00 0.00
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05274-IBu 0 -0.85 -1.40 -4.98 -5.55
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
SmLINC06646-IBu 0 1.59 1.70 -7.49 -7.49
Smp_059210.7 0 0.04 -0.34 -3.63 -6.60

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_059210.7 SmLINC00001-IBu -0.80 2.00e-04 2.80e-03
Smp_059210.7 SmLINC00004-IBu -0.83 1.00e-04 1.50e-03
Smp_059210.7 SmLINC00369-IBu -0.81 2.00e-04 2.30e-03
Smp_059210.7 SmLINC00525-IBu -0.80 2.00e-04 2.90e-03
Smp_059210.7 SmLINC01084-IBu -0.83 1.00e-04 1.40e-03
Smp_059210.7 SmLINC01429-IBu 0.81 2.00e-04 2.40e-03
Smp_059210.7 SmLINC01431-IBu -0.84 8.65e-05 1.20e-03
Smp_059210.7 SmLINC01979-IBu 0.83 1.00e-04 1.50e-03
Smp_059210.7 SmLINC02084-IBu -0.81 2.00e-04 2.50e-03
Smp_059210.7 SmLINC02646-IBu 0.80 3.00e-04 3.20e-03
Smp_059210.7 SmLINC03111-IBu 0.84 6.24e-05 1.00e-03
Smp_059210.7 SmLINC03395-IBu 0.86 3.13e-05 6.00e-04
Smp_059210.7 SmLINC04074-IBu 0.85 4.14e-05 7.00e-04
Smp_059210.7 SmLINC04421-IBu -0.80 2.00e-04 2.70e-03
Smp_059210.7 SmLINC05147-IBu -0.80 3.00e-04 3.20e-03
Smp_059210.7 SmLINC05274-IBu 0.85 5.06e-05 8.00e-04
Smp_059210.7 SmLINC05289-IBu -0.81 2.00e-04 2.60e-03
Smp_059210.7 SmLINC05604-IBu -0.82 1.00e-04 1.90e-03
Smp_059210.7 SmLINC06024-IBu -0.85 3.99e-05 7.00e-04
Smp_059210.7 SmLINC06490-IBu 0.82 1.00e-04 1.90e-03
Smp_059210.7 SmLINC06646-IBu 0.87 2.22e-05 4.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_059210.7 0 0.04 -0.34 -3.63 -6.60
Smp_168800.1 0 0.13 -0.51 -10.46 -10.46
Smp_176230.2 0 0.48 -0.91 -5.65 -11.30

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_059210.7 Smp_168800.1 0.9 4.12e-06 1.00e-04
Smp_059210.7 Smp_176230.2 0.9 3.08e-06 1.00e-04